Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RGH	19133	2024-07-20	2023-12-13	3.9	4.34	3.89	4.0	0.012	1.88	4.0	0.10	14.04	0.02	2.504	0.53	0.00	4.7	95.3	0.0	-1.05	0.82	0.66	1.27	4.0	0.003	0.67	0.0	0.04	15.90	0.00	2.129	12.77	1.15	3.4	96.6	0.0	0.82	1.22	0.84	0.69	1.02	9682	1287	6	0	0	0	0	logfile
✔	8VC2	43130	2024-07-20	2023-12-13	3.98	4.39	3.99	4.4	0.006	0.84	0.0	0.04	14.09	0.01	2.353	2.91	0.31	2.4	97.6	0.0	-0.98	0.57	0.71	1.08	4.4	0.003	0.79	0.0	0.04	16.30	0.00	2.244	10.55	4.09	2.0	98.0	0.0	2.85	2.89	0.57	0.73	1.08	11796	1516	8	0	4	0	0	logfile
✔	8VC1	43129	2024-07-21	2023-12-13	2.85	3.23	2.92	3.2	0.012	1.46	0.0	0.06	17.03	0.01	2.196	4.03	0.30	2.1	97.9	0.0	-1.02	0.59	0.82	3.63	3.3	0.003	0.55	0.0	0.04	16.33	0.00	2.234	8.35	1.56	1.7	98.3	0.0	3.89	0.44	0.56	0.80	2.35	13128	1564	8	0	32	0	0	logfile
✔	8RGG	19132	2024-07-19	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.75	0.0	0.04	15.49	0.00	2.134	16.50	3.42	7.0	93.0	0.0	0.34	2.93	0.75	0.59	—	7679	1156	7	0	0	0	0	logfile
✔	8RF0	19114	2024-07-23	2023-12-12	3.4	4.01	3.68	3.9	0.004	0.73	1.0	0.05	16.92	0.01	2.171	10.52	0.45	8.8	90.3	0.9	-1.04	0.70	0.59	0.72	3.9	0.004	0.77	0.0	0.04	16.09	0.00	2.108	12.21	1.80	9.2	90.2	0.6	-0.98	1.02	0.76	0.75	0.99	21922	2780	4	0	19	0	0	logfile
✔	8RFE	19118	2024-07-23	2023-12-12	3.8	4.63	3.96	4.1	0.003	0.61	0.0	0.04	16.60	0.00	2.148	11.81	0.14	7.6	91.6	0.8	-0.82	0.84	0.80	0.80	4.1	0.003	0.70	0.0	0.04	14.44	0.00	2.035	16.23	0.68	8.7	90.6	0.7	-0.54	0.40	0.85	0.84	0.97	21776	2765	3	0	12	0	0	logfile
✔	8XEJ	38291	2024-07-19	2023-12-12	3.66	3.95	3.64	3.9	0.004	0.84	0.0	0.04	13.95	0.00	2.222	7.98	3.64	4.9	95.1	0.0	0.15	0.66	0.77	1.42	3.9	0.003	0.71	0.0	0.04	15.99	0.00	2.223	7.14	4.42	4.0	96.0	0.0	1.55	2.84	0.70	0.80	1.70	7153	916	5	0	1	0	0	logfile
✔	8RFH	19121	2024-07-20	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.80	0.0	0.05	16.12	0.00	2.218	16.47	2.05	3.7	96.3	0.0	0.24	1.02	0.82	0.75	0.99	11802	1460	4	0	2	0	0	logfile
✔	8RFG	19119	2024-07-23	2023-12-12	3.35	3.85	3.48	3.7	0.004	0.76	0.0	0.04	19.69	0.00	2.000	10.70	0.14	8.9	90.3	0.8	-1.57	0.82	0.82	2.28	3.7	0.003	0.64	0.0	0.04	15.08	0.00	2.108	10.24	1.04	7.7	91.6	0.7	-0.70	0.41	0.79	0.81	1.85	21879	2765	5	0	27	2	0	logfile
✘	8REV	19109	2024-07-19	2023-12-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7797	898	7	26	2	0	0	logfile
✔	8RF9	19116	2024-07-23	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.65	0.0	0.04	15.51	0.00	2.015	10.22	0.90	8.9	90.3	0.8	-0.52	1.33	0.73	0.83	1.83	20646	2642	1	0	0	0	0	logfile
✘	8VAT	43102	2024-07-22	2023-12-11	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19423	2393	13	31	13	0	0	logfile
✔	8XEA	38284	2024-07-25	2023-12-11	3.42	4.58	3.52	3.5	0.003	0.82	0.0	0.05	16.74	0.01	2.204	8.29	0.45	7.4	92.5	0.1	-1.84	0.87	0.74	-0.24	3.5	0.005	0.80	1.0	0.04	16.92	0.00	1.946	21.90	2.98	8.5	91.3	0.2	-1.42	1.38	0.87	0.78	1.25	30213	3871	9	0	0	0	0	logfile
✔	8XE9	38283	2024-07-18	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.69	0.0	0.04	15.79	0.00	2.244	9.83	3.12	8.0	92.0	0.0	-1.34	0.94	0.63	0.88	2.35	3266	420	3	0	0	0	0	logfile
✔	8REA	19080	2024-07-25	2023-12-10	3.4	3.79	3.47	3.4	0.003	0.60	0.0	0.04	18.95	0.01	2.108	8.71	0.23	5.6	94.4	0.0	-0.46	0.79	0.76	1.73	3.4	0.005	0.66	0.0	0.04	19.08	0.00	1.954	10.40	3.56	7.1	92.8	0.0	-0.13	2.03	0.88	0.87	1.64	28821	3668	10	100	3	0	0	logfile
✔	8XD0	38261	2024-07-18	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.52	0.0	0.04	17.79	0.00	2.224	5.56	0.88	2.7	97.1	0.2	1.90	0.83	0.45	0.90	4.02	3357	417	2	0	2	14	0	logfile
✔	8XCW	38257	2024-07-18	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.005	0.54	0.0	0.04	17.03	0.00	2.215	7.84	1.47	3.1	96.9	0.0	1.83	0.43	0.49	0.92	3.80	3347	416	2	0	2	17	0	logfile
✔	8XCS	38253	2024-07-18	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.003	0.52	0.0	0.04	16.56	0.00	2.267	5.41	1.47	2.4	97.6	0.0	1.77	0.89	0.49	0.92	5.48	3360	418	2	0	3	20	0	logfile
✔	8XD6	38267	2024-07-18	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.003	0.54	0.0	0.04	16.53	0.00	2.248	5.68	0.88	1.4	98.6	0.0	1.57	0.43	0.49	0.93	4.82	3402	419	2	0	4	44	0	logfile
✔	8XD1	38262	2024-07-18	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.003	0.57	0.0	0.04	17.35	0.01	2.188	6.23	1.18	3.4	96.6	0.0	1.57	0.47	0.42	0.89	2.86	3307	416	2	0	1	9	0	logfile

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