Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8REC	19082	2024-07-25	2023-12-10	3.5	3.87	3.47	3.5	0.005	0.77	0.0	0.04	19.11	0.01	2.010	11.06	0.37	5.8	94.2	0.0	-0.57	0.82	0.76	1.44	3.5	0.003	0.61	0.0	0.04	19.03	0.00	1.993	11.23	2.65	5.7	94.3	0.1	0.11	0.52	0.87	0.84	1.30	28965	3635	10	104	3	0	0	logfile
✔	8XCT	38254	2024-07-18	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.004	0.54	0.0	0.04	16.52	0.00	2.164	5.27	1.47	2.7	97.1	0.2	1.69	1.73	0.45	0.91	4.23	3358	417	2	0	1	28	0	logfile
✔	8XCo	38249	2024-07-18	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.006	0.57	0.0	0.05	17.39	0.00	2.230	4.68	1.18	2.2	97.8	0.0	1.73	0.55	0.50	0.93	4.09	3335	416	2	0	1	14	0	logfile
✔	8RE4	19079	2024-07-25	2023-12-10	2.8	3.82	2.89	3.0	0.006	0.84	0.0	0.06	18.84	0.01	1.931	14.53	1.66	6.1	93.7	0.2	-0.49	0.86	0.81	2.10	3.1	0.004	0.65	0.0	0.04	18.91	0.00	1.969	8.69	2.55	6.3	93.7	0.0	0.21	2.26	0.92	0.88	2.17	29165	3667	10	102	3	0	0	logfile
✔	8XCW	38257	2024-07-18	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.005	0.54	0.0	0.04	17.03	0.00	2.215	7.84	1.47	3.1	96.9	0.0	1.83	0.43	0.49	0.92	3.80	3347	416	2	0	2	17	0	logfile
✔	8XCV	38256	2024-07-18	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.48	0.0	0.04	15.81	0.00	2.240	5.32	0.59	2.2	97.8	0.0	2.13	0.85	0.48	0.91	3.86	3310	415	2	0	1	7	0	logfile
✔	8RED	19083	2024-07-25	2023-12-10	3.9	4.13	3.86	3.8	0.005	0.68	0.0	0.04	19.76	0.01	2.088	10.12	0.41	6.4	93.5	0.0	-0.58	0.80	0.75	1.60	3.8	0.004	0.64	0.0	0.04	19.70	0.00	1.920	11.17	3.29	6.2	93.8	0.0	0.03	1.19	0.88	0.84	1.31	28878	3617	10	105	3	0	0	logfile
✔	8REE	19084	2024-07-25	2023-12-10	3.8	4.28	4.01	4.1	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.004	0.80	0.0	0.04	19.80	0.00	1.996	17.32	3.25	7.3	92.6	0.1	-1.09	1.48	0.88	0.83	0.99	28605	3617	10	103	3	0	0	logfile
✔	8XCK	38246	2024-07-20	2023-12-09	2.75	2.91	2.75	2.9	0.016	1.66	4.0	0.10	18.70	0.01	2.194	9.21	5.40	11.4	88.1	0.5	-1.67	0.79	0.86	3.52	2.9	0.004	0.73	0.0	0.05	18.74	0.01	2.181	9.86	5.40	10.5	89.4	0.1	-1.49	0.33	0.76	0.83	3.49	10671	1395	6	0	0	0	0	logfile
✔	8XCi	38244	2024-07-19	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	17.94	0.00	2.153	15.30	5.86	7.3	92.3	0.4	-1.90	0.46	0.50	0.74	1.86	8842	1143	3	0	0	0	0	logfile
✘	8XCN	38248	2024-07-19	2023-12-09	3.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8601	1089	5	0	6	0	0	logfile
✔	8XCJ	38245	2024-07-22	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.007	0.67	0.0	0.05	18.36	0.01	2.130	9.62	4.97	4.5	95.1	0.4	-0.60	0.22	0.76	0.89	4.07	19809	2526	6	0	0	0	0	logfile
✘	8XCG	38242	2024-07-24	2023-12-09	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25941	3312	18	0	3	0	0	logfile
✘	8XCM	38247	2024-07-19	2023-12-09	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8605	1089	5	0	6	0	0	logfile
✔	8XBU	38229	2024-07-26	2023-12-07	4.24	5.02	4.02	4.6	0.009	0.95	26.0	0.09	20.92	0.02	1.118	17.68	0.15	1.0	99.0	0.0	-0.07	0.87	0.79	—	4.6	0.005	0.70	0.0	0.04	21.18	0.00	2.116	20.07	0.00	2.7	97.3	0.0	0.72	1.42	0.88	0.80	—	32567	3398	20	309	0	0	0	logfile
✔	8XBS	38227	2024-07-20	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.17	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.003	0.63	0.0	0.04	17.91	0.00	2.338	5.66	2.90	3.2	96.8	0.0	1.90	1.11	0.70	0.87	4.26	10658	1282	8	0	22	0	0	logfile
✘	8XBX	38232	2024-07-19	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✔	8XBT	38228	2024-07-25	2023-12-07	4.12	5.03	3.94	4.6	0.011	1.50	5.0	0.08	23.16	0.04	1.066	9.06	2.05	4.2	95.8	0.0	-1.25	0.87	0.77	—	4.6	0.007	0.76	0.0	0.04	23.03	0.00	2.070	22.06	0.00	3.9	96.1	0.0	-0.21	1.73	0.87	0.79	—	27776	2770	18	309	0	0	0	logfile
✔	8XC1	38236	2024-07-21	2023-12-07	2.21	2.60	2.41	2.6	0.004	1.19	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.005	0.73	0.0	0.04	21.33	0.00	2.243	7.36	3.33	5.1	94.9	0.0	0.77	1.58	0.62	0.80	3.32	13542	1320	12	120	22	0	0	logfile
✔	8XBW	38231	2024-07-18	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.006	1.32	0.0	0.06	23.79	0.01	2.204	30.68	2.48	2.5	97.5	0.0	-2.45	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile

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