Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y6K	33642	2024-07-19	2022-06-20	3.34	3.42	3.31	3.4	0.004	0.65	0.0	0.04	14.23	0.01	2.222	15.89	0.57	4.9	95.1	0.0	-1.02	0.70	0.79	2.98	3.4	0.004	0.61	0.0	0.04	15.36	0.00	2.095	16.13	4.14	4.8	95.2	0.0	-0.60	1.83	0.71	0.82	3.08	6363	834	5	0	1	0	0	logfile
✔	8DE9	27388	2024-07-18	2022-06-20	3.4	4.08	3.48	3.9	0.005	1.12	0.0	0.06	14.38	0.01	2.309	8.02	0.23	3.3	96.7	0.0	2.27	0.60	0.77	1.86	3.9	0.004	1.03	0.0	0.05	17.24	0.00	2.089	16.27	3.20	4.5	95.5	0.0	1.66	3.04	0.55	0.76	1.56	4115	517	3	0	4	0	0	logfile
✔	8DEJ	27393	2024-07-24	2022-06-20	2.86	3.09	2.91	3.0	0.004	0.73	0.0	0.05	17.95	0.00	1.829	4.19	0.36	4.0	96.0	0.0	-0.19	0.70	0.70	3.05	3.0	0.003	0.59	0.0	0.04	19.48	0.00	2.183	4.33	1.97	3.2	96.8	0.0	0.05	0.65	0.81	0.85	2.81	26197	2975	14	135	0	0	0	logfile
✘	7Y6G	33640	2024-07-25	2022-06-20	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31427	3772	48	0	59	0	0	logfile
✘	8A7D	15220	2024-07-20	2022-06-20	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10771	1361	5	0	17	0	0	logfile
✔	8DE7	27386	2024-07-18	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.05	0.0	0.06	16.51	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.004	0.96	0.0	0.05	17.12	0.00	2.091	15.95	3.60	2.5	97.5	0.0	2.45	0.94	0.56	0.76	0.90	4168	526	4	0	4	0	0	logfile
✘	8DE6	27385	2024-07-21	2022-06-20	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13243	1659	10	0	12	0	0	logfile
✘	7Y6F	33639	2024-07-25	2022-06-20	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31427	3772	48	0	59	0	0	logfile
✘	8DE4	27384	2024-07-19	2022-06-19	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6188	767	5	0	9	0	0	logfile
✘	8DE3	27383	2024-07-19	2022-06-19	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6199	767	5	0	9	0	0	logfile
✔	8DDW	27344	2024-07-24	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	4.0	0.003	0.71	0.0	0.04	13.66	0.00	2.020	15.55	0.00	5.7	94.3	0.0	-0.05	1.69	0.78	0.74	—	25869	3198	10	0	68	0	0	logfile
✘	8DDY	27382	2024-07-19	2022-06-19	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7968	954	18	0	9	330	0	logfile
✔	7Y68	33637	2024-07-20	2022-06-18	2.87	3.37	3.03	3.3	0.005	0.70	0.0	0.05	22.41	0.01	2.213	11.36	0.09	5.3	94.7	0.0	-1.61	0.68	0.82	3.50	3.3	0.004	0.62	0.0	0.04	15.90	0.00	2.182	8.93	1.52	5.4	94.6	0.0	0.27	1.19	0.65	0.81	2.88	10264	1300	8	0	18	0	0	logfile
✔	7Y5Z	33629	2024-07-20	2022-06-18	3.4	3.66	3.34	3.5	0.008	1.03	0.0	0.06	14.62	0.01	2.210	4.56	0.96	7.2	92.8	0.0	-4.63	0.66	0.83	3.22	3.5	0.007	0.79	0.0	0.05	14.61	0.00	2.160	10.58	4.91	6.7	93.3	0.0	-0.44	1.68	0.68	0.85	2.41	9962	1214	13	0	25	0	0	logfile
✔	7Y60	33630	2024-07-21	2022-06-18	3.8	5.07	3.90	3.8	0.004	0.67	0.0	0.04	28.44	0.00	2.200	17.05	1.30	4.0	96.0	0.0	-0.08	0.81	0.68	0.94	3.9	0.005	0.79	0.0	0.04	29.34	0.00	2.026	24.43	4.28	3.1	96.9	0.0	0.32	0.86	0.91	0.86	0.73	11378	1004	12	216	0	0	0	logfile
✔	7Y66	33635	2024-07-20	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	1.328	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.60	0.0	0.04	15.59	0.00	2.229	5.11	3.10	3.1	96.9	0.0	0.80	0.43	0.80	0.81	2.54	8917	1139	7	0	2	0	0	logfile
✔	7Y65	33634	2024-07-20	2022-06-18	3.2	3.41	3.19	3.4	0.003	0.59	0.0	0.15	14.43	0.01	2.183	8.62	0.85	3.2	96.7	0.1	0.35	0.61	0.70	1.73	3.4	0.002	0.59	0.0	0.04	16.27	0.00	2.130	9.20	2.33	3.0	97.0	0.0	0.44	0.56	0.66	0.76	1.81	8721	1109	7	0	1	0	0	logfile
✔	8A6L	15210	2024-07-22	2022-06-18	3.18	3.40	3.23	3.4	0.005	0.62	0.0	0.04	10.52	0.01	2.188	4.11	0.00	2.2	97.8	0.0	0.80	0.64	0.82	2.76	3.4	0.003	0.54	0.0	0.04	14.06	0.00	2.083	6.35	0.99	3.4	96.6	0.0	1.25	0.73	0.65	0.85	2.27	16972	1079	5	0	4	3	8495	logfile
✘	8DDQ	27338	2024-07-26	2022-06-18	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31842	3848	12	0	78	0	0	logfile
✔	7Y67	33636	2024-07-20	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.10	0.01	1.329	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	2.1	0.004	0.61	0.0	0.04	16.68	0.00	2.154	5.41	2.08	3.9	96.1	0.0	0.65	0.45	0.81	0.82	2.43	8889	1135	7	0	1	0	0	logfile

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