Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y5Z	33629	2024-07-20	2022-06-18	3.4	3.66	3.34	3.5	0.008	1.03	0.0	0.06	14.62	0.01	2.210	4.56	0.96	7.2	92.8	0.0	-4.63	0.66	0.83	3.22	3.5	0.007	0.79	0.0	0.05	14.61	0.00	2.160	10.58	4.91	6.7	93.3	0.0	-0.44	1.68	0.68	0.85	2.41	9962	1214	13	0	25	0	0	logfile
✔	7Y68	33637	2024-07-20	2022-06-18	2.87	3.37	3.03	3.3	0.005	0.70	0.0	0.05	22.41	0.01	2.213	11.36	0.09	5.3	94.7	0.0	-1.61	0.68	0.82	3.50	3.3	0.004	0.62	0.0	0.04	15.90	0.00	2.182	8.93	1.52	5.4	94.6	0.0	0.27	1.19	0.65	0.81	2.88	10264	1300	8	0	18	0	0	logfile
✔	7Y67	33636	2024-07-20	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.10	0.01	1.329	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	2.1	0.004	0.61	0.0	0.04	16.68	0.00	2.154	5.41	2.08	3.9	96.1	0.0	0.65	0.45	0.81	0.82	2.43	8889	1135	7	0	1	0	0	logfile
✔	8A6L	15210	2024-07-22	2022-06-18	3.18	3.40	3.23	3.4	0.005	0.62	0.0	0.04	10.52	0.01	2.188	4.11	0.00	2.2	97.8	0.0	0.80	0.64	0.82	2.76	3.4	0.003	0.54	0.0	0.04	14.06	0.00	2.083	6.35	0.99	3.4	96.6	0.0	1.25	0.73	0.65	0.85	2.27	16972	1079	5	0	4	3	8495	logfile
✔	7Y66	33635	2024-07-20	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	1.328	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.60	0.0	0.04	15.59	0.00	2.229	5.11	3.10	3.1	96.9	0.0	0.80	0.43	0.80	0.81	2.54	8917	1139	7	0	2	0	0	logfile
✔	7Y5G	33619	2024-07-18	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.51	0.0	0.04	15.53	0.00	2.012	5.62	2.45	1.0	99.0	0.0	1.56	0.67	0.65	0.75	0.12	4736	604	4	0	6	0	0	logfile
✔	7Y5Q	33622	2024-07-21	2022-06-17	3.8	3.59	3.74	3.8	0.005	0.68	0.0	0.05	13.44	0.01	2.314	4.83	6.70	5.6	94.4	0.0	-2.13	0.74	0.77	2.61	3.8	0.005	0.65	0.0	0.05	15.15	0.00	2.106	10.38	4.47	6.6	93.4	0.0	-1.32	0.43	0.74	0.78	2.53	12762	1634	4	0	1	0	0	logfile
✔	8DD2	27332	2024-07-22	2022-06-17	2.9	2.71	2.84	2.9	0.004	0.61	0.0	0.05	14.52	0.01	2.041	5.80	0.00	4.5	95.5	0.0	0.66	0.76	0.86	4.28	2.9	0.005	0.67	0.0	0.04	15.69	0.00	2.115	8.85	3.45	3.9	96.1	0.0	0.51	0.42	0.75	0.89	4.13	17459	2121	17	0	28	0	0	logfile
✔	8DCX	27330	2024-07-20	2022-06-17	2.8	3.32	3.33	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.47	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	3.4	0.006	0.98	1.0	0.04	16.74	0.00	2.200	15.24	1.58	4.6	95.3	0.1	0.37	0.42	0.45	0.60	0.62	9627	1166	2	0	0	0	0	logfile
✔	7Y5H	33620	2024-07-18	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.000	7.00	2.46	1.7	98.3	0.0	1.58	1.08	0.66	0.81	1.36	4704	600	4	0	4	0	0	logfile
✔	8DD3	27333	2024-07-22	2022-06-17	2.9	2.70	2.96	3.1	0.005	0.62	0.0	0.05	14.77	0.00	2.021	6.29	0.00	3.7	96.3	0.0	0.77	0.77	0.85	4.03	3.1	0.003	0.62	0.0	0.04	15.10	0.00	2.157	5.91	2.12	2.4	97.6	0.0	1.43	1.18	0.76	0.86	3.55	17459	2121	17	0	28	0	0	logfile
✔	7Y5S	33623	2024-07-20	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.003	0.71	0.0	0.05	15.68	0.00	2.207	14.01	3.14	9.1	90.9	0.0	-2.23	1.34	0.79	0.79	3.30	11535	1515	3	0	0	0	0	logfile
✘	7Y5N	33621	2024-07-21	2022-06-17	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13034	1639	6	0	20	0	0	logfile
✔	8DD8	27336	2024-07-20	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.34	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.51	0.0	0.04	16.84	0.00	2.188	10.11	0.60	4.1	95.9	0.0	0.47	1.22	0.83	0.84	1.89	10492	1272	2	0	0	0	0	logfile
✔	8DD4	27334	2024-07-20	2022-06-17	3.1	3.27	3.15	3.2	0.003	0.65	0.0	0.04	14.94	0.00	2.219	8.36	0.00	2.8	97.0	0.2	0.21	0.74	0.75	2.15	3.2	0.003	0.65	0.0	0.04	16.65	0.00	2.250	12.83	1.73	3.0	96.9	0.2	0.42	1.61	0.76	0.79	2.28	10426	1255	4	0	0	21	0	logfile
✔	8DD7	27335	2024-07-20	2022-06-17	3.3	3.57	3.30	3.4	0.005	0.94	0.0	0.05	17.63	0.01	2.272	11.26	0.44	6.7	93.3	0.0	-2.46	0.82	0.77	1.51	3.4	0.003	0.66	0.0	0.04	17.63	0.00	2.102	11.89	4.19	5.6	94.4	0.0	0.16	0.55	0.84	0.82	1.30	10370	1275	3	0	1	0	0	logfile
✔	7Y5U	33625	2024-07-21	2022-06-17	3.8	4.49	3.82	4.2	0.002	0.62	0.0	0.04	12.27	0.00	2.212	12.78	0.11	4.0	96.0	0.0	-0.20	0.80	0.69	1.18	4.2	0.003	0.73	0.0	0.05	14.98	0.00	2.193	20.21	2.46	4.6	95.4	0.0	-0.32	3.39	0.85	0.79	1.09	8865	1139	5	0	0	0	0	logfile
✔	7Y5W	33627	2024-07-19	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.004	0.86	0.0	0.04	28.65	0.00	2.096	21.46	3.24	2.5	97.5	0.0	0.93	0.95	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	7Y58	33612	2024-07-19	2022-06-16	3.8	4.04	3.79	4.1	0.005	0.88	3.0	0.05	18.11	0.02	2.068	14.85	3.38	10.0	90.0	0.0	-1.41	0.54	0.76	1.61	4.1	0.004	0.71	0.0	0.04	18.08	0.00	2.120	10.26	4.23	9.2	90.7	0.1	-0.25	1.02	0.60	0.81	1.50	5606	743	3	0	0	0	0	logfile
✔	7Y59	33613	2024-07-28	2022-06-16	4.51	4.79	4.61	4.6	0.003	0.64	0.0	0.04	14.92	0.00	2.117	15.86	0.00	8.1	91.5	0.4	-0.24	0.70	0.73	—	4.6	0.003	0.72	0.0	0.04	14.42	0.00	2.146	16.57	0.00	7.9	91.8	0.3	-0.38	1.51	0.72	0.78	—	41564	5385	16	0	12	0	0	logfile

• ← previous
• Page 223 of 579
• next →