Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y5C	33616	2024-07-27	2022-06-16	4.7	4.41	4.64	4.1	0.003	0.60	0.0	0.04	14.53	0.00	1.916	9.62	0.00	2.6	97.4	0.0	1.08	0.77	0.73	—	4.1	0.002	0.62	0.0	0.04	14.21	0.00	1.932	9.29	0.00	2.5	97.5	0.0	1.39	1.18	0.77	0.74	—	35993	4851	26	0	11	0	0	logfile
✔	7Y5B	33615	2024-07-27	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	15.01	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	3.9	0.002	0.57	0.0	0.04	14.68	0.00	1.990	7.75	0.00	2.3	97.6	0.0	1.73	1.14	0.79	0.80	—	35959	4838	26	0	22	0	0	logfile
✔	7Y4S	33606	2024-07-19	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.004	0.60	0.0	0.04	15.04	0.00	2.220	10.18	3.69	2.2	97.8	0.0	2.64	1.58	0.72	0.78	2.53	4940	686	2	0	0	0	0	logfile
✔	7Y59	33613	2024-07-28	2022-06-16	4.51	4.79	4.61	4.6	0.003	0.64	0.0	0.04	14.92	0.00	2.117	15.86	0.00	8.1	91.5	0.4	-0.24	0.70	0.73	—	4.6	0.003	0.72	0.0	0.04	14.42	0.00	2.146	16.57	0.00	7.9	91.8	0.3	-0.38	1.51	0.72	0.78	—	41564	5385	16	0	12	0	0	logfile
✔	7Y53	33611	2024-07-28	2022-06-16	3.61	4.15	3.76	4.0	0.004	0.71	0.0	0.05	15.24	0.01	2.119	10.11	0.00	8.6	91.0	0.4	-0.33	0.77	0.78	1.33	4.0	0.003	0.70	0.0	0.04	16.55	0.00	2.085	11.57	1.37	7.8	91.8	0.4	-0.09	1.19	0.78	0.80	0.93	42966	5382	16	0	12	0	0	logfile
✔	8A64	15205	2024-07-19	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	10.17	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	4.6	0.003	0.66	0.0	0.04	5.25	0.00	2.057	16.59	0.00	8.8	91.2	0.0	-0.64	1.80	0.91	0.78	—	6737	1354	4	0	3	0	0	logfile
✔	7Y4W	33608	2024-07-28	2022-06-16	3.67	4.29	3.79	4.1	0.002	0.62	0.0	0.04	14.25	0.00	2.137	8.86	0.00	8.1	91.4	0.4	0.01	0.79	0.81	1.11	4.0	0.003	0.73	1.0	0.05	15.99	0.00	2.023	11.80	1.59	8.2	91.3	0.5	0.19	1.17	0.80	0.81	1.03	42776	5385	14	0	4	0	0	logfile
✔	8DCK	27326	2024-07-26	2022-06-16	3.4	3.69	3.43	3.8	0.004	0.74	0.0	0.05	14.84	0.00	2.012	7.99	0.06	4.8	95.2	0.0	0.17	0.67	0.76	1.01	3.8	0.003	0.57	0.0	0.04	16.34	0.00	1.956	10.14	2.29	4.7	95.3	0.0	1.39	1.37	0.66	0.78	0.93	32661	4101	18	0	12	0	0	logfile
✔	8DC2	27320	2024-07-19	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.0	0.004	0.64	0.0	0.04	20.97	0.00	2.113	12.09	2.25	3.9	96.1	0.0	0.68	0.37	0.83	0.85	2.73	7296	673	4	87	0	0	0	logfile
✔	8A5o	15179	2024-07-21	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.34	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.002	0.54	0.0	0.04	16.50	0.00	2.104	6.04	2.16	2.1	97.9	0.1	1.59	1.61	0.81	0.86	2.22	12571	1555	8	0	6	0	0	logfile
✔	8DBZ	27318	2024-07-19	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.004	0.77	0.0	0.05	13.09	0.01	2.132	19.16	0.15	8.3	91.6	0.1	-1.76	0.60	0.64	0.65	—	7960	1184	9	0	0	0	0	logfile
✔	8A5P	15180	2024-07-21	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.87	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.60	0.0	0.04	18.37	0.00	1.968	8.79	1.13	2.9	97.0	0.1	1.87	1.99	0.91	0.87	2.16	13937	1550	10	72	6	0	0	logfile
✘	8DBJ	27286	2024-07-25	2022-06-14	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28992	3708	36	0	60	24	0	logfile
✔	8A5D	15165	2024-07-20	2022-06-14	2.9	3.06	2.94	3.0	0.016	1.88	1.0	0.09	14.05	0.01	2.001	0.82	0.23	2.6	97.3	0.1	-0.81	0.72	0.80	4.42	3.0	0.002	0.55	0.0	0.04	16.24	0.00	2.007	5.03	2.22	2.6	97.4	0.0	1.71	0.53	0.80	0.85	3.39	12222	1519	8	0	6	0	0	logfile
✔	8DAT	27275	2024-07-26	2022-06-14	3.8	4.10	4.01	3.9	0.003	0.53	0.0	0.04	11.09	0.00	1.335	7.34	1.34	5.0	95.0	0.0	1.81	0.81	0.79	1.15	3.9	0.006	0.74	0.0	0.04	13.96	0.00	2.088	11.13	1.93	5.5	94.4	0.0	0.94	2.23	0.83	0.82	1.04	34635	4388	18	0	14	0	0	logfile
✔	8DBH	27284	2024-07-25	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	17.53	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.52	0.0	0.05	16.25	0.00	1.965	5.78	1.53	3.9	96.1	0.0	1.03	0.91	0.74	0.90	5.39	28884	3708	36	0	60	24	0	logfile
✘	8DBi	27285	2024-07-21	2022-06-14	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14496	1854	18	0	30	12	0	logfile
✔	8DAW	27278	2024-07-27	2022-06-14	3.6	4.11	4.00	4.0	0.004	0.98	9.0	0.20	11.53	0.00	1.311	10.04	0.48	5.3	94.6	0.0	1.50	0.82	0.78	1.16	4.0	0.004	0.65	0.0	0.04	13.62	0.00	2.128	10.63	1.87	5.1	94.8	0.0	0.87	0.49	0.83	0.79	1.10	34848	4418	19	0	14	0	0	logfile
✔	8DBV	27310	2024-07-27	2022-06-14	3.7	4.08	3.54	3.6	0.010	1.23	1.0	0.06	14.77	0.01	1.749	3.85	1.86	2.9	97.1	0.0	-1.46	0.77	0.82	1.86	3.6	0.005	0.75	0.0	0.04	15.37	0.00	1.863	11.25	1.23	3.3	96.6	0.0	1.37	1.32	0.79	0.85	1.52	36862	4837	28	0	11	0	0	logfile
✔	8DBU	27307	2024-07-27	2022-06-14	3.4	3.79	3.34	3.4	0.004	0.83	3.0	0.05	14.47	0.01	1.900	2.64	0.76	1.6	98.4	0.0	-0.05	0.77	0.84	2.57	3.4	0.003	0.65	0.0	0.04	15.61	0.00	1.878	9.42	1.80	2.1	97.9	0.0	1.68	1.29	0.78	0.87	1.86	36917	4845	28	0	11	0	0	logfile

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