Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DBQ	27298	2024-07-27	2022-06-14	4.0	4.31	3.95	4.0	0.005	0.89	1.0	0.05	14.27	0.01	1.911	2.02	1.26	1.6	98.3	0.0	-0.19	0.75	0.80	—	4.0	0.003	0.70	0.0	0.04	15.72	0.00	1.943	12.65	1.92	2.5	97.5	0.0	1.29	0.95	0.76	0.84	—	36737	4819	28	0	11	0	0	logfile
✔	7Y48	33603	2024-07-19	2022-06-14	2.85	2.13	2.80	2.0	0.010	0.84	0.0	0.04	13.51	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.003	0.55	0.0	0.04	15.63	0.00	2.343	4.15	1.58	1.2	98.8	0.0	1.70	0.38	0.53	0.79	2.07	4324	567	2	0	2	0	0	logfile
✘	8DBi	27285	2024-07-21	2022-06-14	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14496	1854	18	0	30	12	0	logfile
✔	8DBL	27289	2024-07-21	2022-06-14	2.4	2.55	2.52	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.885	7.60	2.67	3.3	96.7	0.0	0.14	0.67	0.83	4.21	2.5	0.005	0.60	0.0	0.05	15.93	0.00	1.876	8.45	2.48	3.3	96.7	0.0	0.90	0.39	0.67	0.86	3.94	14358	1854	18	0	24	12	0	logfile
✘	8DBJ	27286	2024-07-25	2022-06-14	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28992	3708	36	0	60	24	0	logfile
✔	8DAS	27274	2024-07-26	2022-06-14	3.5	3.99	3.85	3.8	0.003	0.55	0.0	0.04	11.26	0.00	1.355	7.66	1.89	4.9	95.1	0.0	1.57	0.81	0.79	1.20	3.8	0.003	0.63	0.0	0.04	14.43	0.00	2.135	8.53	2.08	4.6	95.4	0.0	1.15	0.71	0.81	0.80	0.91	34059	4315	17	0	14	0	0	logfile
✔	7Y45	33601	2024-07-23	2022-06-14	3.3	3.31	3.23	3.3	0.011	1.48	0.0	0.07	20.37	0.01	2.266	13.31	11.22	10.0	89.3	0.7	-3.83	0.72	0.79	2.30	3.3	0.002	0.61	0.0	0.04	16.53	0.00	2.180	7.01	1.90	3.0	97.0	0.0	0.96	1.36	0.74	0.85	1.81	22638	2654	22	0	78	6	0	logfile
✔	8DBP	27297	2024-07-27	2022-06-14	3.6	4.03	3.50	3.6	0.010	1.20	1.0	0.06	14.62	0.01	1.714	2.50	1.39	2.4	97.5	0.1	-1.13	0.77	0.84	2.09	3.6	0.003	0.67	0.0	0.04	15.32	0.00	1.975	9.42	1.18	1.9	98.1	0.0	1.78	0.79	0.78	0.85	1.65	36622	4800	28	0	11	0	0	logfile
✔	7Y49	33604	2024-07-19	2022-06-14	3.67	2.35	3.54	2.2	0.003	0.59	0.0	0.04	14.27	0.00	2.317	5.03	0.47	3.8	96.2	0.0	0.44	0.49	0.66	2.02	2.2	0.003	0.55	0.0	0.04	15.99	0.00	2.188	4.67	2.82	3.9	95.9	0.2	0.83	0.92	0.50	0.68	1.63	4169	565	1	0	0	0	0	logfile
✔	8DBR	27303	2024-07-27	2022-06-14	3.2	3.63	3.13	3.2	0.010	1.28	1.0	0.07	14.49	0.01	1.890	2.78	0.74	2.7	97.3	0.1	-1.64	0.79	0.85	2.87	3.2	0.003	0.66	0.0	0.04	15.44	0.00	1.935	9.13	1.18	2.0	98.0	0.0	1.65	0.80	0.80	0.87	2.00	36678	4814	28	0	11	0	0	logfile
✔	8DBW	27311	2024-07-27	2022-06-14	4.1	4.40	4.02	4.1	0.004	0.81	1.0	0.05	14.49	0.01	2.029	2.84	1.10	2.2	97.7	0.1	-0.09	0.75	0.79	—	4.1	0.004	0.68	0.0	0.04	13.78	0.00	1.876	12.49	0.03	3.2	96.8	0.0	1.31	0.93	0.76	0.83	—	36835	4837	28	0	11	0	0	logfile
✔	8DAU	27276	2024-07-26	2022-06-14	3.7	4.20	4.07	4.0	0.003	0.93	10.0	0.18	11.50	0.00	1.366	9.92	0.90	5.3	94.7	0.0	1.69	0.82	0.77	0.91	4.0	0.002	0.65	0.0	0.04	14.22	0.00	2.115	8.67	1.79	4.4	95.6	0.0	1.23	0.75	0.82	0.78	0.86	34248	4342	18	0	14	0	0	logfile
✔	8DAT	27275	2024-07-26	2022-06-14	3.8	4.10	4.01	3.9	0.003	0.53	0.0	0.04	11.09	0.00	1.335	7.34	1.34	5.0	95.0	0.0	1.81	0.81	0.79	1.15	3.9	0.006	0.74	0.0	0.04	13.96	0.00	2.088	11.13	1.93	5.5	94.4	0.0	0.94	2.23	0.83	0.82	1.04	34635	4388	18	0	14	0	0	logfile
✔	8DAW	27278	2024-07-27	2022-06-14	3.6	4.11	4.00	4.0	0.004	0.98	9.0	0.20	11.53	0.00	1.311	10.04	0.48	5.3	94.6	0.0	1.50	0.82	0.78	1.16	4.0	0.004	0.65	0.0	0.04	13.62	0.00	2.128	10.63	1.87	5.1	94.8	0.0	0.87	0.49	0.83	0.79	1.10	34848	4418	19	0	14	0	0	logfile
✔	8DAR	27273	2024-07-25	2022-06-14	3.0	3.42	3.13	3.3	0.004	0.60	0.0	0.04	12.52	0.00	2.011	6.25	1.93	4.7	95.3	0.0	1.67	0.81	0.83	2.41	3.3	0.004	0.73	1.0	0.06	15.36	0.01	2.082	7.96	2.21	4.9	95.1	0.0	1.71	0.66	0.76	0.81	1.85	30157	3827	15	0	14	0	0	logfile
✘	8DBE	27281	2024-07-21	2022-06-14	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14982	1896	18	0	30	42	0	logfile
✔	8A5A	15163	2024-07-21	2022-06-14	3.3	3.49	3.27	3.5	0.016	2.08	3.0	0.10	15.44	0.01	1.838	3.05	2.26	4.9	94.7	0.4	-2.22	0.56	0.66	3.59	3.5	0.004	0.59	0.0	0.04	16.23	0.00	1.991	5.45	2.40	3.3	96.5	0.1	0.97	1.22	0.74	0.84	2.30	13191	1629	8	0	6	0	0	logfile
✔	8DBM	27290	2024-07-25	2022-06-14	2.4	2.48	2.47	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.884	7.64	2.67	3.3	96.7	0.0	0.14	0.68	0.82	4.58	2.4	0.003	0.56	0.0	0.05	16.68	0.00	1.896	8.87	4.13	3.4	96.6	0.0	0.98	0.44	0.70	0.87	4.17	28716	3708	36	0	48	24	0	logfile
✔	8DBH	27284	2024-07-25	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	17.53	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.52	0.0	0.05	16.25	0.00	1.965	5.78	1.53	3.9	96.1	0.0	1.03	0.91	0.74	0.90	5.39	28884	3708	36	0	60	24	0	logfile
✔	8DBG	27283	2024-07-21	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	17.53	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.51	0.0	0.05	16.58	0.00	2.028	6.58	1.21	4.0	96.0	0.0	1.04	0.32	0.73	0.90	5.59	14442	1854	18	0	30	12	0	logfile

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