Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DBD	27280	2024-07-25	2022-06-14	3.2	3.20	3.28	3.2	0.007	0.77	0.0	0.06	15.09	0.00	2.119	5.93	2.74	3.3	96.7	0.0	0.45	0.65	0.77	3.28	3.2	0.003	0.52	0.0	0.05	16.30	0.00	2.089	7.64	2.64	4.0	96.0	0.0	0.94	1.29	0.66	0.85	3.08	28464	3708	24	0	24	0	0	logfile
✔	8DBL	27289	2024-07-21	2022-06-14	2.4	2.55	2.52	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.885	7.60	2.67	3.3	96.7	0.0	0.14	0.67	0.83	4.21	2.5	0.005	0.60	0.0	0.05	15.93	0.00	1.876	8.45	2.48	3.3	96.7	0.0	0.90	0.39	0.67	0.86	3.94	14358	1854	18	0	24	12	0	logfile
✔	8A5D	15165	2024-07-20	2022-06-14	2.9	3.06	2.94	3.0	0.016	1.88	1.0	0.09	14.05	0.01	2.001	0.82	0.23	2.6	97.3	0.1	-0.81	0.72	0.80	4.42	3.0	0.002	0.55	0.0	0.04	16.24	0.00	2.007	5.03	2.22	2.6	97.4	0.0	1.71	0.53	0.80	0.85	3.39	12222	1519	8	0	6	0	0	logfile
✔	8DBC	27279	2024-07-21	2022-06-14	3.2	3.28	3.24	3.2	0.007	0.77	0.0	0.06	15.09	0.00	2.119	5.93	2.74	3.3	96.7	0.0	0.45	0.65	0.76	3.24	3.2	0.003	0.53	0.0	0.05	16.49	0.00	2.080	10.59	2.86	3.7	96.3	0.0	0.90	1.33	0.66	0.84	3.38	14232	1854	12	0	12	0	0	logfile
✔	7Y42	33600	2024-07-23	2022-06-13	3.45	3.86	3.62	3.8	0.006	0.84	0.0	0.05	14.43	0.01	2.121	11.84	0.59	9.5	90.5	0.0	-3.02	0.77	0.81	2.57	3.8	0.003	0.75	0.0	0.05	15.83	0.00	2.170	8.92	2.22	5.0	94.9	0.0	-2.02	0.41	0.78	0.83	2.10	23058	2904	6	0	30	0	0	logfile
✔	8DAD	27270	2024-07-18	2022-06-13	3.85	4.05	3.91	4.0	0.004	0.83	1.0	0.05	17.77	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	3.9	0.007	1.42	1.0	0.06	16.04	0.01	2.253	16.16	7.30	4.8	95.2	0.0	-1.20	0.46	0.65	0.74	2.00	3255	424	5	0	4	0	0	logfile
✔	8A4L	15148	2024-07-19	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.007	0.68	0.0	0.06	17.32	0.00	2.250	10.61	4.23	3.0	97.0	0.0	-3.67	1.56	0.53	0.87	5.60	7755	1125	15	0	0	0	0	logfile
✔	8D9X	27269	2024-07-21	2022-06-11	3.8	2.68	3.64	2.8	0.004	0.71	2.0	0.04	13.94	0.01	2.217	13.63	0.58	3.9	96.1	0.0	0.05	0.72	0.71	1.68	2.8	0.003	0.63	0.0	0.04	17.29	0.00	2.148	12.42	6.01	3.7	96.3	0.0	0.64	1.26	0.73	0.72	1.55	12670	1680	8	0	0	0	0	logfile
✔	7Y36	33590	2024-07-19	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.003	0.76	0.0	0.04	16.68	0.00	2.068	11.93	2.83	3.7	96.3	0.0	1.15	1.47	0.62	0.76	2.11	9206	1151	7	0	1	0	0	logfile
✔	8D9L	27265	2024-07-19	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.006	0.71	0.0	0.04	17.81	0.00	2.057	27.60	0.00	4.4	95.6	0.0	-0.33	1.49	0.91	0.84	—	5757	553	4	65	1	0	0	logfile
✔	8D9N	27267	2024-07-19	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.37	0.00	2.199	4.56	0.00	5.3	94.7	0.0	0.51	0.56	0.36	-0.05	—	7186	902	2	0	0	0	0	logfile
✔	7Y3E	33592	2024-07-21	2022-06-10	2.8	2.97	2.80	3.1	0.004	0.71	0.0	0.04	14.07	0.00	2.197	12.01	0.00	6.0	94.0	0.0	0.52	0.64	0.80	2.34	3.1	0.004	0.59	0.0	0.04	17.15	0.00	2.202	9.82	3.88	4.6	95.4	0.0	1.27	0.46	0.63	0.82	2.00	14572	1856	4	0	4	0	0	logfile
✘	8D9M	27266	2024-07-21	2022-06-10	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15967	1806	14	0	56	0	0	logfile
✔	7Y3G	33594	2024-07-19	2022-06-10	2.77	2.32	2.89	2.1	0.004	0.66	0.0	0.04	16.44	0.01	2.029	7.02	3.04	3.9	96.1	0.0	0.49	0.79	0.81	2.50	2.1	0.003	0.60	0.0	0.04	16.61	0.00	2.139	5.11	3.86	3.4	96.6	0.0	0.84	1.15	0.80	0.82	2.04	7864	1001	5	0	0	0	0	logfile
✔	8A43	15135	2024-07-26	2022-06-10	4.09	3.90	4.09	3.7	0.008	1.01	0.0	0.05	15.37	0.01	2.028	24.41	0.41	15.2	84.6	0.2	-4.94	0.78	0.68	—	3.7	0.003	0.71	0.0	0.04	14.48	0.00	2.025	13.21	0.00	8.4	91.6	0.0	-1.84	0.65	0.78	0.67	—	31109	3914	12	0	0	0	0	logfile
✔	7Y26	33586	2024-07-19	2022-06-09	3.3	3.67	3.39	3.7	0.003	0.57	0.0	0.04	12.62	0.00	1.328	4.71	0.00	3.0	97.0	0.0	0.69	0.66	0.80	3.02	3.6	0.004	0.65	0.0	0.04	14.68	0.00	2.052	4.84	1.84	3.7	96.2	0.1	0.24	0.39	0.66	0.82	2.67	8014	1111	7	0	2	0	0	logfile
✔	8D97	27257	2024-07-21	2022-06-09	3.8	3.96	3.72	3.8	0.004	0.64	0.0	0.04	17.28	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.002	0.51	0.0	0.04	17.90	0.00	2.199	7.84	0.85	3.5	96.5	0.0	-0.19	0.41	0.87	0.86	1.95	13874	1600	3	42	4	0	0	logfile
✔	7Y1Z	33576	2024-07-27	2022-06-09	3.4	3.68	3.49	3.6	0.007	0.89	1.0	0.07	13.26	0.00	1.926	12.96	1.54	6.8	91.6	1.7	-3.20	0.57	0.52	0.75	3.7	0.003	0.71	0.0	0.04	15.41	0.00	2.148	7.96	2.14	5.5	94.3	0.2	-1.08	1.60	0.68	0.75	1.53	39583	4786	50	0	104	0	0	logfile
✔	7Y21	33578	2024-07-27	2022-06-09	2.8	3.03	2.89	3.0	0.008	0.91	0.0	0.07	13.99	0.01	1.848	7.34	3.40	6.4	92.4	1.2	-3.48	0.53	0.50	1.34	3.0	0.008	0.92	0.0	0.06	16.13	0.01	2.010	10.71	3.21	7.8	92.0	0.1	-1.96	1.44	0.64	0.71	1.84	39547	4786	50	0	104	0	0	logfile
✘	8D9D	27258	2024-07-22	2022-06-09	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19409	2312	10	30	8	0	0	logfile

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