Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8D9F	27260	2024-07-22	2022-06-09	2.71	3.74	2.92	3.4	0.010	0.94	0.0	0.06	15.70	0.01	2.015	10.10	0.06	3.3	96.6	0.1	0.50	0.82	0.83	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16163	1912	4	33	4	0	0	logfile
✔	7Y24	33585	2024-07-19	2022-06-09	3.25	3.61	3.34	3.6	0.004	0.68	2.0	0.06	12.93	0.00	1.329	12.97	0.37	3.0	97.0	0.0	0.69	0.61	0.73	1.83	3.5	0.003	0.64	0.0	0.04	15.35	0.00	2.215	11.59	3.33	3.2	96.8	0.0	0.80	1.18	0.62	0.76	1.15	8229	1127	7	0	2	0	0	logfile
✔	7Y27	33587	2024-07-19	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	13.37	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.002	0.55	0.0	0.04	14.89	0.00	2.118	4.92	2.46	3.1	96.9	0.0	0.79	0.95	0.67	0.82	1.77	8184	1137	7	0	1	0	0	logfile
✔	8A40	15129	2024-07-26	2022-06-09	3.0	3.43	3.02	3.2	0.004	0.72	0.0	0.05	15.67	0.01	2.105	5.03	0.00	3.6	96.4	0.0	-0.65	0.86	0.88	2.91	3.2	0.003	0.62	0.0	0.04	17.02	0.00	1.999	8.52	0.87	3.8	96.2	0.0	0.78	0.43	0.85	0.89	2.68	34177	4066	20	85	14	0	0	logfile
✔	7Y1Y	33575	2024-07-27	2022-06-09	3.3	3.62	3.45	3.4	0.007	0.92	0.0	0.07	13.43	0.00	1.930	14.69	2.16	7.1	91.0	1.9	-3.28	0.62	0.54	0.51	3.5	0.007	0.81	0.0	0.05	15.41	0.00	1.975	10.39	2.33	7.2	92.5	0.3	-1.14	1.99	0.76	0.80	1.50	39556	4786	50	0	104	0	0	logfile
✔	7Y20	33577	2024-07-26	2022-06-09	3.8	4.39	4.07	4.2	0.008	0.91	0.0	0.07	12.64	0.00	2.034	11.19	1.31	6.5	91.8	1.7	-2.99	0.64	0.56	1.69	4.2	0.003	0.69	0.0	0.04	14.44	0.00	2.133	8.22	1.75	4.9	94.8	0.2	-0.59	1.46	0.73	0.76	1.57	34269	4153	43	0	93	0	0	logfile
✔	7Y21	33578	2024-07-27	2022-06-09	2.8	3.03	2.89	3.0	0.008	0.91	0.0	0.07	13.99	0.01	1.848	7.34	3.40	6.4	92.4	1.2	-3.48	0.53	0.50	1.34	3.0	0.008	0.92	0.0	0.06	16.13	0.01	2.010	10.71	3.21	7.8	92.0	0.1	-1.96	1.44	0.64	0.71	1.84	39547	4786	50	0	104	0	0	logfile
✔	7Y1Z	33576	2024-07-27	2022-06-09	3.4	3.68	3.49	3.6	0.007	0.89	1.0	0.07	13.26	0.00	1.926	12.96	1.54	6.8	91.6	1.7	-3.20	0.57	0.52	0.75	3.7	0.003	0.71	0.0	0.04	15.41	0.00	2.148	7.96	2.14	5.5	94.3	0.2	-1.08	1.60	0.68	0.75	1.53	39583	4786	50	0	104	0	0	logfile
✔	7Y1M	33566	2024-07-20	2022-06-08	3.57	3.80	3.54	3.7	0.004	0.53	0.0	0.04	12.73	0.00	2.234	8.36	0.33	2.1	97.9	0.0	2.52	0.69	0.85	1.58	3.8	0.002	0.57	0.0	0.04	14.75	0.00	1.989	6.97	1.97	1.5	98.5	0.0	3.19	0.46	0.69	0.84	1.02	8957	1166	2	0	5	0	0	logfile
✔	8D8R	27255	2024-07-18	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.75	0.0	0.05	13.17	0.00	2.287	14.13	0.28	7.6	92.4	0.0	-0.57	1.90	0.62	0.66	—	3323	425	4	0	1	0	0	logfile
✔	7Y1K	33564	2024-07-19	2022-06-08	3.8	4.04	3.87	4.0	0.005	0.61	0.0	0.04	12.89	0.00	2.011	7.48	2.96	1.7	98.3	0.0	0.96	0.66	0.82	2.35	4.0	0.002	0.64	0.0	0.04	14.70	0.00	1.929	9.22	3.82	2.0	98.0	0.0	2.44	1.03	0.65	0.81	1.68	8510	1164	2	0	5	0	0	logfile
✔	7Y1B	33559	2024-07-18	2022-06-08	3.23	3.55	3.34	3.5	0.006	0.64	0.0	0.05	14.26	0.01	2.340	4.92	0.00	9.8	90.2	0.0	-1.42	0.74	0.84	3.37	3.5	0.003	0.59	0.0	0.04	15.49	0.01	2.211	3.93	1.05	5.4	94.6	0.0	-0.17	0.89	0.73	0.86	2.99	4137	541	3	0	0	0	0	logfile
✘	7Y1T	33572	2024-07-19	2022-06-08	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8112	1030	10	0	24	0	0	logfile
✔	8D8Q	27254	2024-07-19	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.02	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.003	0.69	0.0	0.04	12.90	0.00	2.189	12.92	0.00	4.9	95.1	0.0	-0.62	1.01	0.67	0.75	—	5202	669	6	0	1	0	0	logfile
✔	7Y1J	33563	2024-07-20	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.003	0.49	0.0	0.04	15.04	0.00	1.946	5.86	1.77	0.8	99.2	0.0	2.72	0.43	0.71	0.86	3.20	9487	1204	2	0	5	0	0	logfile
✔	8D8N	27252	2024-07-20	2022-06-08	3.6	4.03	3.70	4.1	0.008	0.84	1.0	0.05	18.21	0.01	1.828	13.60	0.28	11.2	88.5	0.3	-4.01	0.75	0.76	2.10	4.0	0.003	0.59	0.0	0.04	18.76	0.00	2.072	7.92	2.50	5.6	94.1	0.3	-0.82	0.72	0.79	0.82	2.12	11275	1256	4	56	4	0	0	logfile
✔	7Y1R	33571	2024-07-19	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.19	0.00	2.160	11.89	0.00	7.8	92.1	0.1	-2.62	0.70	0.63	0.62	—	8565	1041	11	0	20	0	0	logfile
✔	7Y1F	33562	2024-07-19	2022-06-08	3.3	3.13	3.30	3.3	0.007	1.12	0.0	0.06	13.79	0.01	2.215	9.10	0.00	6.7	93.3	0.0	-2.25	0.55	0.71	3.16	3.3	0.004	0.73	0.0	0.04	15.87	0.00	2.131	14.90	3.14	6.4	93.5	0.1	-0.46	1.18	0.55	0.72	2.12	8691	1131	6	0	0	0	0	logfile
✔	7Y1L	33565	2024-07-20	2022-06-08	3.73	3.98	3.74	3.9	0.005	0.59	0.0	0.04	12.44	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.003	0.60	0.0	0.04	14.56	0.00	1.995	9.46	2.05	1.4	98.6	0.0	2.81	0.46	0.64	0.85	0.68	8955	1189	2	0	5	0	0	logfile
✔	7Y1N	33567	2024-07-19	2022-06-08	3.61	3.87	3.57	3.8	0.005	0.70	0.0	0.04	12.08	0.00	2.118	8.54	1.30	2.2	97.8	0.0	2.40	0.67	0.85	2.14	3.8	0.003	0.61	0.0	0.04	14.51	0.00	1.952	7.44	2.83	1.2	98.8	0.0	2.77	0.46	0.67	0.85	1.40	8763	1171	2	0	5	0	0	logfile

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