Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1R	33571	2024-07-19	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.19	0.00	2.160	11.89	0.00	7.8	92.1	0.1	-2.62	0.70	0.63	0.62	—	8565	1041	11	0	20	0	0	logfile
✔	8D7Y	27238	2024-07-20	2022-06-07	3.4	3.72	3.45	3.6	0.003	0.58	0.0	0.05	13.76	0.00	2.276	11.11	0.72	6.8	92.6	0.6	-2.04	0.76	0.77	2.82	3.6	0.002	0.54	0.0	0.05	14.79	0.00	2.248	8.00	1.57	6.2	93.7	0.1	-1.59	0.37	0.80	0.82	2.65	10086	1484	3	0	1	0	0	logfile
✔	8A3B	15110	2024-07-21	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.003	0.54	0.0	0.04	16.19	0.00	2.180	6.80	1.88	1.5	98.5	0.0	2.39	0.46	0.74	0.77	2.10	14448	1792	7	0	0	0	0	logfile
✘	8D85	27247	2024-07-19	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.53	0.0	0.04	19.55	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7093	865	10	0	11	0	0	logfile
✔	8D7H	27230	2024-07-21	2022-06-07	3.4	3.69	3.48	3.6	0.003	0.53	0.0	0.04	12.37	0.00	2.291	4.59	1.06	3.9	96.1	0.0	-1.37	0.68	0.76	1.60	3.6	0.003	0.66	0.0	0.05	13.79	0.00	2.229	5.92	2.71	6.7	93.3	0.0	0.28	0.59	0.71	0.84	2.02	12540	1526	22	0	32	0	0	logfile
✔	8D82	27244	2024-07-22	2022-06-07	3.22	3.52	3.30	3.4	0.003	0.52	0.0	0.04	19.91	0.00	2.239	6.01	0.95	4.6	95.4	0.0	-2.63	0.69	0.76	1.43	3.4	0.003	0.64	0.0	0.04	15.77	0.00	2.171	7.34	3.59	5.9	94.1	0.0	-0.86	1.07	0.72	0.83	2.20	17366	2108	20	0	38	0	0	logfile
✔	8D7X	27237	2024-07-20	2022-06-07	3.4	3.65	3.41	3.5	0.006	0.65	1.0	0.05	13.45	0.00	2.219	8.94	0.60	8.6	91.2	0.2	-2.20	0.74	0.76	3.37	3.5	0.003	0.56	0.0	0.04	14.86	0.00	2.219	7.17	2.52	6.6	93.4	0.1	-1.89	0.31	0.82	0.85	2.57	10108	1484	3	0	1	0	0	logfile
✔	8D80	27241	2024-07-20	2022-06-07	3.6	3.97	3.35	3.6	0.004	0.63	0.0	0.05	15.29	0.01	2.212	8.72	0.75	5.7	93.7	0.6	-1.72	0.89	0.85	3.20	3.6	0.004	0.59	0.0	0.04	15.84	0.00	2.136	8.85	1.51	5.7	93.9	0.3	-1.52	0.53	0.89	0.85	2.97	11230	1542	5	0	3	0	0	logfile
✘	8D7R	27231	2024-07-20	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	15.03	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9627	1167	12	0	16	0	0	logfile
✔	8D7E	27228	2024-07-21	2022-06-07	2.93	3.17	2.98	3.1	0.002	0.49	0.0	0.04	11.95	0.00	2.257	5.40	0.70	2.9	97.1	0.0	-2.25	0.67	0.81	3.32	3.1	0.003	0.60	0.0	0.04	15.46	0.00	2.218	5.63	4.50	4.2	95.8	0.0	0.27	1.57	0.67	0.86	3.28	8959	1143	9	0	8	0	0	logfile
✔	8D81	27242	2024-07-19	2022-06-07	3.9	4.14	3.89	4.1	0.004	0.65	0.0	0.05	14.94	0.00	2.266	9.87	1.32	7.1	92.4	0.6	-2.23	0.73	0.74	2.42	4.1	0.003	0.60	0.0	0.04	16.04	0.00	2.170	9.38	1.93	6.3	93.4	0.3	-1.62	0.55	0.75	0.80	2.00	9248	1198	3	0	2	0	0	logfile
✘	8D63	27215	2024-07-21	2022-06-06	3.14	3.26	3.09	3.2	0.009	0.99	0.0	0.06	16.37	0.01	2.290	9.81	0.36	5.0	94.7	0.3	-1.01	0.65	0.81	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12785	1535	10	0	5	0	0	logfile
✘	8A2Y	15108	2024-07-21	2022-06-06	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15078	1835	15	0	15	528	0	logfile
✘	8A2U	15107	2024-07-21	2022-06-06	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15022	1830	15	0	15	512	0	logfile
✔	7Y14	33556	2024-07-18	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.56	1.0	0.04	15.35	0.00	2.261	9.21	3.03	4.2	95.8	0.0	3.32	1.53	0.50	0.78	2.00	2145	265	2	0	4	0	0	logfile
✘	8A2R	15104	2024-07-21	2022-06-06	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14990	1830	15	0	15	480	0	logfile
✔	8A2T	15106	2024-07-21	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.004	0.63	0.0	0.05	16.33	0.00	1.888	4.24	1.10	1.2	98.8	0.0	1.54	2.23	0.74	0.90	5.43	15046	1830	15	0	10	556	0	logfile
✔	7Y0W	33552	2024-07-19	2022-06-06	3.42	3.69	3.35	3.6	0.006	0.95	0.0	0.06	14.24	0.01	2.295	4.22	0.18	6.9	93.1	0.0	-2.40	0.68	0.83	2.65	3.6	0.004	0.60	0.0	0.05	15.43	0.00	2.108	11.36	3.85	7.0	93.0	0.0	-1.50	0.38	0.68	0.85	2.42	5086	651	6	0	3	0	0	logfile
✘	8A2Z	15109	2024-07-21	2022-06-06	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15060	1830	15	0	10	570	0	logfile
✔	8D6A	27221	2024-07-19	2022-06-06	3.54	3.92	3.53	3.7	0.003	0.56	0.0	0.04	16.68	0.00	2.261	6.62	0.00	8.0	92.0	0.0	-3.01	0.75	0.72	0.93	3.7	0.003	0.67	0.0	0.04	14.53	0.00	2.083	9.74	2.41	10.1	89.9	0.0	-1.52	0.70	0.77	0.78	1.51	7912	963	9	0	15	0	0	logfile

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