Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A02	15045	2024-07-19	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.003	0.50	0.0	0.05	17.30	0.00	2.249	5.20	3.02	1.8	98.2	0.0	-0.31	0.28	0.52	0.86	2.50	5511	717	3	0	0	0	0	logfile
✔	7ZZQ	15039	2024-07-22	2022-05-26	2.6	3.53	2.62	3.0	0.002	0.46	0.0	0.04	18.37	0.00	2.094	5.12	1.18	1.9	98.1	0.0	1.31	0.88	0.83	3.23	3.0	0.004	0.72	0.0	0.04	17.76	0.00	2.138	8.55	1.65	2.0	97.9	0.0	1.77	0.73	0.91	0.93	2.80	19527	2468	46	0	0	105	0	logfile
✔	8D13	27114	2024-07-20	2022-05-26	2.43	3.23	2.44	2.8	0.003	0.60	0.0	0.05	13.77	0.00	2.067	4.19	0.64	0.8	99.2	0.0	1.47	0.69	0.86	4.45	2.8	0.002	0.54	0.0	0.04	14.50	0.00	1.910	4.30	0.21	1.3	98.7	0.0	2.23	1.09	0.70	0.92	4.26	9216	1113	9	0	6	432	0	logfile
✔	7XW6	33492	2024-07-24	2022-05-26	2.78	2.25	2.80	3.0	0.013	1.79	11.0	0.11	12.30	0.02	2.533	0.89	0.07	4.5	95.5	0.0	-0.16	0.74	0.75	3.92	2.2	0.003	0.60	0.0	0.04	13.91	0.00	1.893	7.12	1.04	2.6	97.3	0.1	0.63	1.64	0.75	0.79	3.48	24998	1550	8	0	27	0	12117	logfile
✔	8A06	15051	2024-07-18	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.003	0.61	0.0	0.05	17.11	0.00	2.273	4.67	8.76	4.1	95.9	0.0	-1.52	0.41	0.26	0.79	—	1185	147	1	0	0	0	0	logfile
✔	7ZZ1	15031	2024-07-19	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.25	0.01	2.159	3.90	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.003	0.62	0.0	0.04	17.77	0.00	2.108	8.41	3.07	2.6	97.4	0.0	1.01	1.10	0.91	0.90	4.01	4958	618	5	0	4	55	0	logfile
✔	7ZZ6	15036	2024-07-19	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.003	0.58	0.0	0.04	16.92	0.00	2.076	8.34	1.51	2.8	97.2	0.0	1.29	0.25	0.92	0.91	4.73	8257	1017	6	0	6	157	0	logfile
✔	8CZo	27100	2024-07-26	2022-05-25	4.3	2.75	4.13	2.2	0.004	0.75	0.0	0.04	16.53	0.00	2.084	18.96	0.00	10.9	89.1	0.0	-2.32	0.50	0.66	—	1.8	0.003	0.80	0.0	0.05	14.30	0.00	2.116	14.24	0.08	8.2	91.8	0.0	-0.24	1.40	0.49	0.64	—	34518	4268	44	0	0	0	0	logfile
✔	7ZZ4	15034	2024-07-18	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	18.14	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.55	0.0	0.04	17.25	0.00	1.903	10.42	1.06	3.7	96.3	0.0	1.00	1.10	0.87	0.85	3.78	3682	463	2	0	3	11	0	logfile
✔	7ZYZ	15029	2024-07-18	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.58	0.0	0.04	18.18	0.00	2.053	9.82	2.40	2.1	97.9	0.0	0.86	0.38	0.88	0.88	3.44	4349	541	2	0	2	38	0	logfile
✘	7ZYV	15027	2024-07-22	2022-05-25	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16452	1946	29	0	32	0	0	logfile
✔	7ZYL	15026	2024-07-18	2022-05-25	2.08	2.56	2.12	2.4	0.022	0.98	0.0	0.05	21.36	0.00	2.104	14.15	0.00	0.8	99.2	0.0	0.55	0.77	0.89	6.49	2.4	0.003	0.68	0.0	0.05	19.15	0.00	2.294	6.95	1.90	0.8	99.2	0.0	0.45	0.30	0.79	0.90	6.49	3992	484	12	0	12	0	0	logfile
✔	7ZZ2	15032	2024-07-18	2022-05-25	2.48	2.80	2.37	2.1	0.005	0.76	0.0	0.05	17.25	0.01	2.132	4.21	3.27	2.2	97.8	0.0	-0.30	0.90	0.89	3.91	2.1	0.003	0.51	0.0	0.04	17.05	0.00	2.082	6.08	2.18	2.1	97.9	0.0	1.63	1.09	0.90	0.90	3.53	4366	541	2	0	3	57	0	logfile
✔	7ZZ3	15033	2024-07-26	2022-05-25	2.41	2.71	2.40	2.4	0.006	0.86	0.0	0.05	17.24	0.00	2.065	4.87	1.75	2.5	97.5	0.0	-1.03	0.93	0.90	4.05	2.4	0.013	0.63	0.0	0.04	16.92	0.01	2.004	8.61	1.64	2.3	97.7	0.0	0.82	1.09	0.93	0.90	4.01	34427	4311	12	0	26	166	0	logfile
✔	7ZYY	15028	2024-07-26	2022-05-25	2.12	2.40	2.14	2.1	0.007	0.89	0.0	0.05	17.50	0.00	2.008	4.42	1.19	2.4	97.6	0.0	-0.65	0.91	0.89	4.75	2.1	0.003	0.58	0.0	0.04	17.30	0.00	1.946	7.47	1.27	2.4	97.6	0.0	0.81	1.08	0.91	0.89	4.60	33924	4224	12	0	28	324	0	logfile
✔	7ZZ0	15030	2024-07-18	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.002	0.50	0.0	0.04	16.70	0.00	2.127	4.91	2.40	1.9	98.1	0.0	1.58	0.21	0.92	0.91	4.53	4387	541	2	0	2	84	0	logfile
✔	7ZZ5	15035	2024-07-18	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.81	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.59	0.0	0.05	17.45	0.00	2.180	9.81	1.86	3.7	96.3	0.0	0.56	0.35	0.89	0.89	4.01	3633	461	2	0	2	0	0	logfile
✔	8CYV	27085	2024-07-19	2022-05-24	3.5	3.17	3.47	3.7	0.003	0.61	0.0	0.05	10.01	0.00	2.423	5.36	0.00	5.9	94.1	0.0	-4.11	0.58	0.72	2.74	3.4	0.004	0.73	0.0	0.05	15.99	0.00	2.281	10.56	6.50	7.6	91.8	0.6	-4.32	1.34	0.60	0.75	2.48	5964	864	12	0	0	0	0	logfile
✔	8CZi	27098	2024-07-18	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	8CZE	27096	2024-07-20	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.81	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.004	0.58	0.0	0.03	26.58	0.00	2.252	4.11	1.42	3.2	96.8	0.0	2.44	0.26	0.86	0.86	2.87	12029	763	10	292	0	0	0	logfile

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