Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CZE	27096	2024-07-20	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.81	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.004	0.58	0.0	0.03	26.58	0.00	2.252	4.11	1.42	3.2	96.8	0.0	2.44	0.26	0.86	0.86	2.87	12029	763	10	292	0	0	0	logfile
✔	8CZi	27098	2024-07-18	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✘	7ZYi	15024	2024-07-19	2022-05-24	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6641	852	5	0	6	1	0	logfile
✔	7ZYG	15022	2024-07-19	2022-05-24	2.68	3.62	2.80	3.4	0.002	0.46	0.0	0.04	16.31	0.00	2.263	3.82	0.00	2.3	97.7	0.0	0.57	0.69	0.83	3.24	3.4	0.005	0.61	0.0	0.04	18.10	0.00	2.198	7.36	1.08	3.5	96.5	0.0	0.85	0.75	0.69	0.83	2.71	8914	1039	7	30	1	0	0	logfile
✔	8CYJ	27080	2024-07-20	2022-05-23	3.6	4.32	3.59	3.6	0.003	0.62	0.0	0.04	14.18	0.01	2.056	7.59	0.00	6.7	92.5	0.9	-0.91	0.79	0.57	1.23	3.8	0.004	0.68	0.0	0.04	16.23	0.01	1.992	21.45	3.80	10.0	89.3	0.7	-1.87	0.82	0.81	0.65	0.78	10575	701	5	0	0	0	5089	logfile
✘	7ZXY	15017	2024-07-22	2022-05-23	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15606	1913	25	0	23	0	0	logfile
✔	8CY9	27071	2024-07-25	2022-05-23	2.9	3.60	3.07	3.3	0.002	0.51	0.0	0.04	13.25	0.00	2.199	6.57	0.19	3.8	96.1	0.1	0.62	0.78	0.81	1.75	3.3	0.004	0.57	0.0	0.04	14.85	0.00	2.127	9.57	1.17	4.6	95.3	0.1	0.14	1.59	0.78	0.82	2.17	28469	3663	6	0	0	0	0	logfile
✔	7XVG	33486	2024-07-19	2022-05-23	3.6	3.89	—	3.8	0.004	0.73	0.0	0.05	14.26	0.00	2.074	12.92	0.28	5.9	94.0	0.1	-0.97	0.74	0.78	1.82	3.8	0.003	0.70	0.0	0.04	16.44	0.00	2.190	10.99	2.62	5.3	94.7	0.0	-0.60	0.53	0.75	0.78	1.09	6438	794	2	0	0	0	0	logfile
✔	8CY8	27070	2024-07-25	2022-05-23	2.94	3.19	3.01	3.2	0.011	0.79	0.0	0.06	12.77	0.01	2.171	3.51	0.00	0.6	99.4	0.0	1.60	0.74	0.87	4.77	3.2	0.005	0.62	0.0	0.05	15.85	0.00	2.163	4.85	1.19	1.9	98.1	0.0	1.70	0.92	0.74	0.89	3.52	28800	3744	23	0	12	0	0	logfile
✘	8CYi	27078	2024-07-21	2022-05-23	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14621	932	3	0	2	0	7191	logfile
✔	8CYD	27075	2024-07-25	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	3.0	0.006	0.63	0.0	0.05	14.40	0.00	2.084	8.57	1.52	5.4	94.4	0.2	-0.11	1.16	0.80	0.84	2.49	28454	3663	6	0	0	0	0	logfile
✔	8CYC	27074	2024-07-25	2022-05-23	2.9	3.44	2.92	3.2	0.002	0.53	0.0	0.04	13.71	0.00	2.186	8.20	0.16	5.4	94.3	0.3	-0.06	0.74	0.71	1.18	3.2	0.007	0.75	0.0	0.05	15.58	0.00	2.079	16.06	2.61	7.8	92.0	0.2	-0.98	0.51	0.76	0.77	1.83	28697	3677	6	0	0	0	0	logfile
✔	8CXo	27062	2024-07-18	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.10	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.73	0.0	0.04	15.60	0.00	2.260	12.07	3.66	4.6	95.4	0.0	1.88	1.90	0.61	0.79	1.02	4392	551	2	0	1	0	0	logfile
✔	7ZXP	15013	2024-07-22	2022-05-22	2.39	2.72	2.35	2.5	0.002	0.42	0.0	0.04	14.73	0.00	2.332	3.46	1.17	1.1	98.9	0.0	4.20	0.72	0.87	3.52	2.6	0.003	0.42	0.0	0.04	15.58	0.00	2.295	3.28	2.68	1.1	98.9	0.0	4.86	0.90	0.64	0.90	3.48	18420	2292	12	0	0	0	0	logfile
✔	8CXi	27058	2024-07-22	2022-05-21	3.4	3.96	3.26	3.9	0.008	0.97	5.0	0.09	14.27	0.01	0.857	26.16	3.00	9.6	89.7	0.7	-2.57	0.43	0.75	1.93	3.9	0.004	0.78	0.0	0.05	15.82	0.00	2.116	11.37	4.78	10.5	89.3	0.2	-1.30	1.23	0.29	0.73	1.54	16832	2196	12	0	8	0	0	logfile
✔	8CXH	27056	2024-07-22	2022-05-21	3.2	3.54	2.91	3.4	0.008	0.90	5.0	0.06	13.14	0.01	0.938	26.23	2.74	9.6	90.0	0.4	-2.57	0.52	0.81	2.39	3.4	0.003	0.62	0.0	0.04	15.61	0.00	2.152	8.81	3.97	7.5	92.4	0.1	-0.85	1.20	0.50	0.85	2.05	16634	2178	10	0	0	0	0	logfile
✔	7ZXo	15012	2024-07-22	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.216	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.002	0.46	0.0	0.04	16.02	0.00	2.309	3.01	1.52	1.0	99.0	0.0	4.56	0.62	0.65	0.91	3.03	17016	2124	12	0	0	0	0	logfile
✔	8CXG	27055	2024-07-22	2022-05-21	3.2	3.80	3.18	3.6	0.008	0.96	9.0	0.06	12.57	0.01	1.081	28.53	2.73	8.8	90.8	0.4	-2.16	0.46	0.72	1.89	3.6	0.006	0.92	1.0	0.05	15.49	0.01	2.157	13.66	4.90	10.4	89.5	0.1	-0.55	1.63	0.44	0.80	1.48	18381	2399	12	0	0	0	0	logfile
✔	7ZXN	15011	2024-07-23	2022-05-21	3.06	2.82	3.05	3.1	0.005	0.78	0.0	0.06	12.93	0.02	2.173	11.52	0.00	4.4	95.6	0.0	2.95	0.56	0.79	1.24	3.1	0.003	0.51	0.0	0.04	15.01	0.00	1.869	5.83	2.15	2.8	97.2	0.0	4.23	1.43	0.60	0.86	2.18	20466	1242	12	0	6	0	10278	logfile
✔	7ZXE	15009	2024-07-21	2022-05-20	3.5	4.20	3.49	3.6	0.003	0.55	0.0	0.04	19.34	0.00	1.978	8.64	0.00	3.4	96.6	0.0	0.71	0.76	0.76	1.21	3.7	0.003	0.68	0.0	0.04	20.65	0.00	2.067	13.71	1.72	4.0	96.0	0.0	0.97	1.25	0.78	0.81	1.32	14150	1500	11	93	2	0	0	logfile

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