Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CX1	27033	2024-07-21	2022-05-19	3.3	4.00	3.27	2.9	0.004	0.65	0.0	0.04	14.85	0.00	2.244	4.34	0.06	2.7	97.3	0.0	0.14	0.79	0.65	2.34	3.0	0.004	0.68	0.0	0.04	16.31	0.00	2.067	13.18	1.94	3.3	96.7	0.0	0.60	2.81	0.87	0.81	2.06	15184	1781	16	16	6	0	0	logfile
✔	8CX2	27034	2024-07-21	2022-05-19	3.2	3.94	3.21	3.2	0.004	0.57	0.0	0.04	15.04	0.00	2.264	4.01	0.00	2.2	97.8	0.0	0.64	0.83	0.76	2.56	3.3	0.003	0.64	0.0	0.04	16.55	0.00	2.196	10.08	1.58	3.1	96.9	0.0	0.68	1.16	0.85	0.82	2.15	15041	1756	16	18	6	0	0	logfile
✘	8CWo	27028	2024-07-26	2022-05-19	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34342	1508	16	1044	66	1	0	logfile
✔	7ZWC	14996	2024-07-21	2022-05-19	3.2	3.57	3.12	3.3	0.003	0.53	0.0	0.04	18.42	0.00	2.067	7.82	0.00	3.7	96.3	0.0	1.08	0.74	0.80	2.49	3.4	0.004	0.67	0.0	0.04	20.17	0.00	2.133	11.47	2.02	4.5	95.5	0.0	0.71	0.48	0.77	0.85	2.67	13944	1500	11	83	2	0	0	logfile
✔	8CWY	27031	2024-07-28	2022-05-19	3.34	3.58	3.35	3.6	0.002	0.32	0.0	0.03	8.10	0.00	2.026	6.16	0.02	0.8	99.2	0.0	5.71	0.53	0.63	1.88	3.6	0.003	0.42	0.0	0.03	11.83	0.00	2.269	6.08	0.91	0.6	99.4	0.0	6.58	1.16	0.56	0.74	1.33	43620	6300	24	0	0	0	0	logfile
✔	8CWW	27030	2024-07-21	2022-05-19	2.74	3.44	2.94	3.3	0.003	0.48	0.0	0.03	24.38	0.00	2.368	2.74	0.25	2.6	97.4	0.0	0.45	0.86	0.87	3.79	3.3	0.005	0.57	0.0	0.04	25.72	0.00	2.242	3.02	1.72	3.7	96.3	0.0	1.95	0.44	0.90	0.91	2.84	13625	962	12	292	2	0	0	logfile
✔	8CX0	27032	2024-07-19	2022-05-19	2.7	3.46	2.59	3.0	0.006	0.70	0.0	0.05	14.18	0.00	2.270	2.23	0.00	3.0	97.0	0.0	0.97	0.87	0.84	3.62	3.0	0.003	0.72	0.0	0.04	15.74	0.00	2.106	9.24	1.00	2.5	97.5	0.0	1.33	2.02	0.87	0.88	3.21	7575	889	8	8	3	0	0	logfile
✘	7ZWH	14998	2024-07-27	2022-05-19	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40231	2660	8	0	20	0	19501	logfile
✘	7XUM	33474	2024-07-19	2022-05-19	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6155	816	2	0	1	0	0	logfile
✔	7XUR	33477	2024-07-19	2022-05-19	3.49	3.71	3.49	3.6	0.005	0.72	0.0	0.04	19.36	0.00	2.207	10.26	0.00	8.8	91.2	0.0	-2.26	0.77	0.78	2.19	3.6	0.003	0.56	0.0	0.04	20.18	0.00	2.159	8.59	0.97	5.4	94.6	0.0	-1.04	0.36	0.77	0.78	2.04	7749	814	6	48	2	0	0	logfile
✔	7XUN	33475	2024-07-19	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.004	0.68	0.0	0.05	15.88	0.00	2.137	13.82	2.61	5.2	94.8	0.0	-0.25	1.11	0.73	0.78	0.26	5591	741	1	0	0	0	0	logfile
✔	7ZWA	14995	2024-07-19	2022-05-19	2.8	3.47	2.87	3.3	0.003	0.51	0.0	0.04	16.75	0.00	2.220	7.51	0.00	4.3	95.7	0.0	0.85	0.77	0.85	3.12	3.3	0.004	0.61	0.0	0.04	18.52	0.00	2.200	9.19	1.50	3.7	96.3	0.0	0.92	0.37	0.77	0.86	2.88	9038	1055	6	31	1	0	0	logfile
✔	7XUE	33466	2024-07-25	2022-05-18	3.17	3.21	—	3.2	0.004	0.76	0.0	0.05	17.67	0.00	1.985	5.27	0.04	6.2	93.8	0.0	-1.87	0.75	0.81	2.39	3.2	0.005	0.66	0.0	0.04	18.63	0.00	1.914	8.82	2.50	6.0	94.0	0.0	-0.45	0.48	0.74	0.84	1.98	27864	3199	9	136	3	0	0	logfile
✔	7XUi	33470	2024-07-25	2022-05-18	3.61	3.69	—	3.7	0.009	0.88	0.0	0.05	17.02	0.01	1.885	9.08	0.00	11.7	88.3	0.0	-2.66	0.82	0.83	2.37	3.7	0.004	0.75	0.0	0.04	17.89	0.00	1.947	12.56	2.00	6.9	93.1	0.0	-0.88	0.51	0.81	0.83	1.49	29610	3473	9	111	3	0	0	logfile
✘	7XUG	33468	2024-07-24	2022-05-18	3.57	3.53	—	3.6	0.009	0.87	0.0	0.05	16.50	0.01	1.938	6.66	0.11	8.9	91.0	0.1	-2.20	0.77	0.82	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26026	3172	9	60	3	0	0	logfile
✔	8CVY	27021	2024-07-22	2022-05-18	3.6	3.82	3.60	3.8	0.008	1.47	16.0	0.12	15.01	0.01	2.214	10.00	6.05	2.7	97.3	0.0	0.51	0.70	0.79	1.45	3.8	0.003	0.63	0.0	0.04	16.61	0.00	2.205	14.19	3.58	3.7	96.3	0.0	0.87	0.97	0.72	0.78	1.71	17930	2226	7	0	0	0	0	logfile
✘	7XUL	33473	2024-07-20	2022-05-18	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11082	1380	4	0	10	0	0	logfile
✔	8CVN	27010	2024-07-18	2022-05-18	2.4	3.23	2.42	3.1	0.018	1.47	3.0	0.18	18.52	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.46	0.0	0.04	18.23	0.00	2.303	4.34	1.69	1.4	98.6	0.0	1.98	0.82	0.76	0.87	2.77	4054	512	4	0	4	0	0	logfile
✔	8CVX	27020	2024-07-23	2022-05-18	3.5	3.62	3.40	3.6	0.009	1.58	16.0	0.11	16.38	0.01	2.272	8.19	5.13	4.5	95.3	0.2	-3.03	0.64	0.75	1.74	3.6	0.004	0.62	0.0	0.04	17.05	0.00	2.185	11.99	2.15	3.5	96.5	0.0	-0.23	1.52	0.67	0.77	1.87	20448	2541	12	0	4	0	0	logfile
✔	7XUF	33467	2024-07-21	2022-05-18	3.3	3.58	3.39	3.6	0.003	0.58	0.0	0.04	14.57	0.00	2.137	4.75	0.00	5.2	94.8	0.0	-1.36	0.58	0.77	2.06	3.6	0.005	0.62	0.0	0.04	16.19	0.00	2.145	5.58	1.68	6.1	93.9	0.0	-0.76	2.60	0.56	0.81	1.87	15041	1864	6	0	3	0	0	logfile

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