Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CVN	27010	2024-07-18	2022-05-18	2.4	3.23	2.42	3.1	0.018	1.47	3.0	0.18	18.52	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.46	0.0	0.04	18.23	0.00	2.303	4.34	1.69	1.4	98.6	0.0	1.98	0.82	0.76	0.87	2.77	4054	512	4	0	4	0	0	logfile
✔	8CVZ	27022	2024-07-24	2022-05-18	3.52	3.83	3.62	3.9	0.008	1.57	40.0	0.13	14.87	0.01	2.118	11.00	5.85	3.0	96.9	0.1	-0.25	0.70	0.78	1.78	3.8	0.004	0.67	0.0	0.04	16.42	0.00	2.064	13.96	2.85	3.8	96.2	0.0	0.48	1.25	0.69	0.75	1.47	24517	3070	10	0	0	0	0	logfile
✔	7XUJ	33471	2024-07-20	2022-05-18	2.8	3.15	2.67	3.0	0.010	0.94	0.0	0.06	13.43	0.01	2.262	2.73	1.82	6.7	93.3	0.0	-3.62	0.65	0.86	3.54	3.0	0.003	0.62	0.0	0.04	14.02	0.00	2.041	6.11	1.40	6.2	93.8	0.0	0.04	0.41	0.66	0.87	3.40	11296	1406	4	0	10	0	0	logfile
✘	7XUL	33473	2024-07-20	2022-05-18	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11082	1380	4	0	10	0	0	logfile
✔	7XUH	33469	2024-07-20	2022-05-18	2.76	3.05	2.70	3.0	0.011	0.96	0.0	0.05	14.39	0.01	2.275	2.58	0.98	6.0	94.0	0.0	-3.53	0.71	0.88	3.72	3.0	0.004	0.61	0.0	0.04	14.97	0.00	2.213	5.25	2.46	4.8	95.2	0.0	0.67	1.62	0.67	0.87	3.05	11380	1414	6	0	10	4	0	logfile
✔	7XUi	33470	2024-07-25	2022-05-18	3.61	3.69	—	3.7	0.009	0.88	0.0	0.05	17.02	0.01	1.885	9.08	0.00	11.7	88.3	0.0	-2.66	0.82	0.83	2.37	3.7	0.004	0.75	0.0	0.04	17.89	0.00	1.947	12.56	2.00	6.9	93.1	0.0	-0.88	0.51	0.81	0.83	1.49	29610	3473	9	111	3	0	0	logfile
✘	8CW9	27024	2024-07-25	2022-05-18	3.46	2.48	—	2.2	0.002	0.67	0.0	0.05	13.45	0.01	2.196	3.46	1.25	5.7	94.1	0.1	-1.23	0.74	0.73	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20229	2658	18	0	3	0	0	logfile
✔	8CW4	27023	2024-07-28	2022-05-18	3.0	3.18	3.05	3.1	0.007	0.80	0.0	0.04	28.78	0.03	2.109	6.32	0.00	2.9	97.1	0.0	2.21	0.75	0.87	4.87	3.1	0.003	0.52	0.0	0.04	17.28	0.00	2.192	3.18	1.48	2.1	97.9	0.0	4.07	0.37	0.75	0.89	3.63	39270	4900	135	0	70	0	0	logfile
✘	7XTQ	33452	2024-07-19	2022-05-17	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8010	1027	6	0	1	0	0	logfile
✔	8CUE	26999	2024-07-27	2022-05-17	3.2	3.57	3.25	3.7	0.010	1.82	0.0	0.04	24.54	0.00	2.541	2.88	0.00	1.5	98.5	0.0	0.78	0.73	0.83	2.63	3.6	0.004	0.51	0.0	0.04	18.24	0.00	2.178	6.91	0.92	1.6	98.4	0.0	2.61	1.66	0.76	0.87	1.89	37240	4900	140	0	70	0	0	logfile
✔	8CUJ	27001	2024-07-18	2022-05-17	3.04	2.55	3.04	3.2	0.002	0.53	0.0	0.04	14.73	0.00	2.276	5.90	0.00	2.1	97.9	0.0	1.48	0.44	0.80	0.86	3.1	0.002	0.52	0.0	0.04	15.64	0.00	2.309	5.16	3.32	1.6	98.4	0.0	1.50	0.89	0.43	0.79	1.00	3293	433	2	0	0	1	0	logfile
✔	7XTG	33448	2024-07-21	2022-05-17	2.2	2.41	2.26	2.5	0.004	0.76	0.0	0.04	18.20	0.01	2.094	13.57	2.55	4.4	95.4	0.1	-0.48	0.60	0.72	1.71	2.4	0.003	0.61	0.0	0.04	17.18	0.00	2.241	7.69	1.68	3.6	96.3	0.1	2.18	2.08	0.67	0.89	3.00	15435	2034	15	0	3	0	0	logfile
✔	8CUA	26997	2024-07-20	2022-05-17	2.44	2.61	2.45	2.8	0.003	0.58	0.0	0.04	15.57	0.00	2.226	4.24	0.00	1.8	98.2	0.0	2.01	0.64	0.83	1.77	2.7	0.003	0.54	0.0	0.04	16.37	0.00	2.231	4.04	1.73	2.0	98.0	0.0	2.18	0.90	0.61	0.84	1.89	9531	1248	9	0	3	30	0	logfile
✔	7ZW1	14991	2024-07-20	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	3.9	0.002	0.49	0.0	0.03	17.45	0.00	2.028	7.96	1.58	2.5	97.5	0.0	3.24	0.70	0.65	0.80	1.22	11807	760	3	0	0	0	5883	logfile
✔	8CUi	27000	2024-07-20	2022-05-17	2.55	2.73	2.53	2.8	0.003	0.53	0.0	0.04	15.72	0.00	2.264	4.77	0.00	1.7	98.3	0.0	1.71	0.63	0.85	3.07	2.8	0.003	0.55	0.0	0.04	16.20	0.00	2.274	4.57	2.15	2.1	97.9	0.0	2.11	0.23	0.61	0.85	2.96	9357	1230	3	0	0	0	0	logfile
✔	7ZVW	14989	2024-07-27	2022-05-17	3.4	3.29	—	3.6	0.004	0.75	14.0	0.05	14.63	0.00	2.004	11.10	0.82	3.7	96.1	0.2	1.73	0.72	0.66	0.46	3.6	0.003	0.75	0.0	0.04	17.01	0.00	1.924	13.75	3.03	3.6	96.4	0.0	1.73	1.26	0.79	0.80	1.12	37905	4955	9	0	4	0	0	logfile
✔	7ZVT	14986	2024-07-19	2022-05-17	2.74	3.38	2.78	3.2	0.004	0.57	0.0	0.04	19.19	0.00	2.192	7.49	2.94	1.6	98.4	0.0	1.55	0.83	0.89	3.04	3.2	0.003	0.56	0.0	0.04	19.18	0.00	2.087	8.12	1.74	1.7	98.3	0.0	1.68	0.26	0.82	0.90	2.75	8842	1022	5	30	1	0	0	logfile
✔	7XTK	33451	2024-07-18	2022-05-17	2.89	3.27	2.92	3.2	0.004	0.87	0.0	0.04	13.37	0.01	1.873	9.37	0.00	6.4	92.3	1.3	-1.05	0.59	0.83	2.77	3.2	0.003	0.63	0.0	0.04	14.86	0.00	2.156	7.65	1.47	6.4	92.8	0.8	0.95	1.72	0.57	0.83	1.91	3159	395	1	0	0	0	0	logfile
✘	8CV2	27006	2024-07-20	2022-05-17	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9882	1299	6	0	6	0	0	logfile
✘	8CV3	27007	2024-07-18	2022-05-17	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3168	416	2	0	2	0	0	logfile

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