Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CTG	26989	2024-07-19	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.93	0.0	0.04	7.61	0.01	2.248	9.85	2.30	16.2	83.7	0.1	-3.19	2.04	0.60	0.44	1.71	5100	1006	4	0	1	0	0	logfile
✔	7XSM	33427	2024-07-20	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.67	0.01	1.798	49.89	0.00	0.0	0.0	0.0	—	1.72	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7XSL	33426	2024-07-20	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.81	0.01	1.808	34.33	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8CTD	26986	2024-07-29	2022-05-14	3.42	3.05	3.37	3.4	0.003	0.63	0.0	0.04	15.42	0.00	2.248	9.77	0.00	2.2	97.8	0.0	0.84	0.45	0.78	1.12	3.3	0.003	0.59	0.0	0.04	16.37	0.00	2.203	7.91	4.39	0.7	99.3	0.0	1.50	1.15	0.45	0.79	1.59	3130	411	2	0	4	0	0	logfile
✔	8CTH	26990	2024-07-19	2022-05-14	3.3	3.53	3.29	3.5	0.003	0.68	0.0	0.04	19.26	0.01	2.257	11.99	0.00	3.3	96.7	0.0	-1.68	0.64	0.67	1.91	3.5	0.004	0.64	0.0	0.04	19.14	0.00	2.110	13.84	4.73	6.4	93.6	0.0	-1.87	0.56	0.66	0.70	2.12	5544	495	4	74	0	0	0	logfile
✔	8CTi	26991	2024-07-19	2022-05-14	3.6	3.83	3.60	3.7	0.011	0.79	0.0	0.04	20.28	0.00	2.164	11.82	0.49	3.1	96.9	0.0	-1.49	0.67	0.63	1.75	3.8	0.003	0.63	0.0	0.04	19.98	0.00	2.187	16.31	4.14	4.6	95.4	0.0	-0.84	2.64	0.70	0.65	1.26	5297	473	3	71	0	0	0	logfile
✔	8CSZ	26976	2024-07-19	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	23.81	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.005	0.61	0.0	0.04	23.50	0.00	1.910	10.24	2.12	5.3	94.7	0.0	-0.41	1.11	0.84	0.88	3.45	8948	494	5	236	3	0	0	logfile
✘	8CTC	26985	2024-07-20	2022-05-13	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9306	1221	12	0	9	12	0	logfile
✔	8CT2	26978	2024-07-19	2022-05-13	3.1	2.85	3.02	2.9	0.004	0.61	0.0	0.04	12.30	0.00	2.209	4.55	2.03	2.6	97.0	0.4	1.50	0.61	0.86	5.28	2.9	0.002	0.52	0.0	0.04	12.99	0.00	2.220	7.18	1.62	3.1	96.5	0.4	2.43	0.25	0.61	0.85	4.53	7464	988	6	0	4	0	0	logfile
✔	8CSY	26975	2024-07-18	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.002	0.50	0.0	0.04	17.08	0.00	2.236	5.97	3.25	1.6	98.4	0.0	1.38	0.62	0.63	0.87	4.29	4638	584	4	0	0	19	0	logfile
✔	8CSW	26973	2024-07-19	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.003	0.56	0.0	0.04	16.70	0.00	2.123	5.61	2.33	1.4	98.6	0.0	0.96	0.41	0.63	0.88	5.75	5332	657	2	0	0	165	0	logfile
✔	7XS7	33423	2024-07-21	2022-05-13	3.2	3.43	3.32	3.4	0.004	0.71	0.0	0.04	14.80	0.00	1.946	3.69	0.16	4.2	95.6	0.3	-2.73	0.69	0.86	3.61	3.4	0.004	0.57	0.0	0.04	15.84	0.00	2.322	2.73	1.94	5.1	94.8	0.1	-0.25	0.98	0.68	0.88	2.95	12270	1458	4	0	42	0	0	logfile
✔	8CT6	26983	2024-07-21	2022-05-13	3.1	3.35	3.17	3.2	0.004	0.64	0.0	0.05	17.17	0.00	2.240	12.75	1.00	2.8	97.2	0.0	0.03	0.79	0.84	2.39	3.2	0.004	0.64	0.0	0.04	16.21	0.00	1.690	12.92	4.04	2.5	97.5	0.1	0.19	1.09	0.80	0.85	2.35	14918	1857	14	0	23	0	0	logfile
✔	8CSV	26972	2024-07-18	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.003	0.50	0.0	0.04	15.66	0.00	2.202	6.56	2.07	2.9	96.9	0.2	2.28	0.56	0.56	0.88	4.67	3712	483	3	0	0	48	0	logfile
✔	8CSX	26974	2024-07-20	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	15.46	0.01	2.208	4.92	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.005	0.65	0.0	0.05	15.12	0.00	2.039	6.80	3.00	2.1	97.9	0.0	2.25	0.36	0.69	0.88	4.75	9116	1158	8	0	4	150	0	logfile
✔	8CSA	26961	2024-07-23	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.003	0.63	0.0	0.04	15.03	0.00	2.087	11.86	1.95	3.7	96.3	0.0	-0.06	1.66	0.83	0.78	0.22	23442	3003	3	0	0	0	0	logfile
✔	8CSJ	26964	2024-07-26	2022-05-12	3.53	4.61	3.61	3.9	0.004	0.68	1.0	0.05	15.00	0.01	1.270	4.36	0.29	3.2	96.7	0.1	-0.73	0.88	0.83	1.60	3.9	0.004	0.65	0.0	0.04	15.07	0.00	2.097	13.27	2.56	4.7	95.3	0.1	0.03	1.28	0.89	0.86	1.64	31934	4035	18	0	45	0	0	logfile
✔	7XS6	33422	2024-07-21	2022-05-12	2.9	3.04	2.79	3.0	0.009	0.82	0.0	0.04	15.46	0.00	2.112	6.80	0.61	5.3	94.5	0.2	-1.32	0.69	0.85	3.57	3.0	0.003	0.52	0.0	0.04	15.91	0.00	2.201	6.52	0.83	3.8	96.2	0.0	1.02	0.39	0.66	0.86	2.94	12440	1458	4	0	44	0	0	logfile
✔	7V0X	26952	2024-07-18	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.003	0.54	0.0	0.04	18.66	0.00	2.172	7.58	2.69	4.9	95.1	0.0	1.78	0.46	0.60	0.88	3.24	2818	375	1	0	0	0	0	logfile
✔	7V0U	26951	2024-07-18	2022-05-11	3.0	2.84	2.93	2.9	0.005	0.75	0.0	0.05	20.37	0.01	2.232	7.29	2.50	1.5	98.5	0.0	0.61	0.64	0.86	3.90	2.9	0.003	0.55	0.0	0.04	20.52	0.00	2.145	9.31	3.96	2.2	97.8	0.0	1.42	0.55	0.62	0.86	3.52	4453	558	3	0	0	2	0	logfile

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