Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CRT	26958	2024-07-22	2022-05-11	3.0	2.91	3.16	3.0	0.003	0.58	0.0	0.04	12.63	0.01	2.205	5.06	2.36	1.5	98.5	0.0	1.86	0.51	0.72	2.69	3.0	0.004	0.59	0.0	0.04	14.48	0.00	2.120	8.87	2.25	2.1	97.9	0.0	2.06	0.66	0.52	0.84	2.26	17925	2305	12	0	6	0	0	logfile
✔	7XRP	33416	2024-07-18	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.36	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.003	0.70	0.0	0.04	16.35	0.00	2.198	12.48	4.51	7.4	92.6	0.0	-3.27	0.67	0.53	0.80	1.99	4129	515	5	0	4	0	0	logfile
✔	7V0Y	26953	2024-07-18	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.004	0.60	0.0	0.04	19.52	0.00	2.064	9.75	2.49	1.6	98.4	0.0	1.03	0.35	0.61	0.86	3.13	4454	558	3	0	0	1	0	logfile
✔	7V0U	26951	2024-07-18	2022-05-11	3.0	2.84	2.93	2.9	0.005	0.75	0.0	0.05	20.37	0.01	2.232	7.29	2.50	1.5	98.5	0.0	0.61	0.64	0.86	3.90	2.9	0.003	0.55	0.0	0.04	20.52	0.00	2.145	9.31	3.96	2.2	97.8	0.0	1.42	0.55	0.62	0.86	3.52	4453	558	3	0	0	2	0	logfile
✔	7V0M	26944	2024-07-18	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.47	0.0	0.04	18.20	0.00	2.211	4.92	3.10	3.3	96.7	0.0	1.89	0.23	0.55	0.88	4.32	3724	483	4	0	0	60	0	logfile
✔	7V0Q	26948	2024-07-19	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.55	0.0	0.04	18.55	0.00	2.165	4.34	2.86	1.2	98.8	0.0	1.84	0.25	0.59	0.89	5.54	5301	658	2	0	0	127	0	logfile
✔	7XRD	33414	2024-07-19	2022-05-10	3.9	3.64	—	3.6	0.002	0.57	0.0	0.04	14.12	0.00	2.012	1.57	0.52	2.0	98.0	0.0	-0.70	0.42	0.75	2.59	3.7	0.003	0.73	0.0	0.05	17.19	0.00	1.887	11.60	2.43	3.9	96.1	0.0	-0.24	1.41	0.42	0.78	2.36	5460	656	8	0	8	0	0	logfile
✔	7V0S	26949	2024-07-20	2022-05-10	2.5	2.21	2.53	2.3	0.004	0.73	0.0	0.05	16.39	0.00	2.208	5.09	2.55	1.7	98.2	0.1	1.73	0.70	0.88	4.46	2.3	0.004	0.61	0.0	0.04	16.26	0.00	2.190	6.12	2.27	1.8	98.2	0.0	2.15	0.23	0.70	0.89	4.26	10303	1315	10	0	3	178	0	logfile
✔	7ZTH	14960	2024-07-19	2022-05-10	4.0	4.19	3.99	4.1	0.009	1.07	0.0	0.06	23.04	0.01	2.244	6.78	1.24	10.0	90.0	0.0	-5.31	0.71	0.76	—	4.1	0.003	0.66	0.0	0.04	22.86	0.00	2.196	11.00	4.35	6.0	94.0	0.0	-2.67	0.54	0.71	0.75	—	7620	722	4	82	0	0	0	logfile
✔	7ZT6	14955	2024-07-19	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.004	0.63	0.0	0.04	14.26	0.00	2.168	13.63	1.16	3.3	96.7	0.0	0.86	0.72	0.93	0.88	2.02	8073	1031	3	0	1	0	0	logfile
✔	7UZK	26914	2024-07-28	2022-05-09	3.0	3.14	—	3.1	0.012	1.74	8.0	0.09	12.77	0.01	2.272	0.21	0.30	2.6	97.2	0.2	-0.44	0.71	0.81	3.51	3.1	0.003	0.64	0.0	0.04	16.43	0.00	2.152	6.16	1.77	2.7	97.3	0.0	1.53	1.68	0.72	0.83	2.60	45246	5702	20	0	2	0	0	logfile
✔	7UZU	26918	2024-07-19	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.49	0.0	0.04	17.61	0.00	2.110	3.83	0.78	3.5	96.5	0.0	2.64	0.16	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	7UZW	26920	2024-07-21	2022-05-09	3.55	4.43	3.43	3.7	0.006	0.77	0.0	0.05	14.77	0.00	1.945	10.42	0.06	6.8	93.2	0.1	-0.88	0.84	0.75	1.73	3.7	0.003	0.64	0.0	0.04	16.75	0.00	2.119	11.49	1.87	4.7	95.3	0.0	0.26	1.49	0.90	0.84	1.58	14754	1760	8	31	0	0	0	logfile
✔	7UZY	26922	2024-07-21	2022-05-09	4.05	5.04	4.10	3.8	0.005	0.76	0.0	0.05	13.95	0.01	1.373	14.50	0.38	4.7	95.2	0.1	-0.62	0.77	0.63	—	3.8	0.003	0.66	0.0	0.04	15.25	0.00	2.050	17.86	0.06	3.1	96.8	0.1	-0.09	1.25	0.83	0.74	—	15332	1781	11	44	0	0	0	logfile
✔	7ZTC	14957	2024-07-24	2022-05-09	3.9	3.69	3.89	3.8	0.004	0.84	0.0	0.05	13.85	0.01	2.123	5.33	0.00	6.9	93.1	0.0	-2.20	0.71	0.82	3.21	3.7	0.003	0.69	0.0	0.04	15.52	0.00	2.130	7.19	1.66	4.1	95.9	0.0	0.13	2.51	0.71	0.83	2.30	25652	2920	20	0	548	0	0	logfile
✔	7XR4	33407	2024-07-20	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	15.58	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.003	0.53	0.0	0.04	14.73	0.00	2.235	9.81	1.43	1.2	98.8	0.0	3.16	1.09	0.71	0.85	1.42	10026	1278	9	0	27	0	0	logfile
✘	7V00	26924	2024-07-23	2022-05-09	3.87	4.80	3.89	3.9	0.006	0.86	0.0	0.05	14.51	0.00	1.987	15.28	0.32	4.7	95.3	0.0	-1.00	0.85	0.72	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20420	2430	12	30	2	0	0	logfile
✘	7XQW	33402	2024-07-20	2022-05-09	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10391	1331	4	0	10	0	0	logfile
✔	7ZTD	14958	2024-07-24	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.004	0.74	0.0	0.04	14.00	0.00	2.123	11.13	0.00	3.7	96.3	0.0	0.35	10.46	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	7UZM	26915	2024-07-23	2022-05-09	3.24	3.48	3.30	3.5	0.003	0.64	0.0	0.04	12.39	0.00	2.329	8.20	0.00	1.8	98.2	0.0	1.59	0.62	0.71	2.28	3.5	0.007	0.96	5.0	0.05	15.76	0.01	2.147	10.15	3.74	2.3	97.7	0.0	1.42	1.26	0.75	0.82	2.43	22752	2964	6	0	0	0	0	logfile

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