Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZQ	26916	2024-07-23	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	17.12	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.003	0.59	0.0	0.04	15.48	0.00	2.063	5.03	2.27	2.1	97.8	0.1	2.03	0.25	0.69	0.88	5.75	20617	1315	10	0	4	235	10214	logfile
✘	7XQW	33402	2024-07-20	2022-05-09	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10391	1331	4	0	10	0	0	logfile
✔	7UZW	26920	2024-07-21	2022-05-09	3.55	4.43	3.43	3.7	0.006	0.77	0.0	0.05	14.77	0.00	1.945	10.42	0.06	6.8	93.2	0.1	-0.88	0.84	0.75	1.73	3.7	0.003	0.64	0.0	0.04	16.75	0.00	2.119	11.49	1.87	4.7	95.3	0.0	0.26	1.49	0.90	0.84	1.58	14754	1760	8	31	0	0	0	logfile
✘	7V00	26924	2024-07-23	2022-05-09	3.87	4.80	3.89	3.9	0.006	0.86	0.0	0.05	14.51	0.00	1.987	15.28	0.32	4.7	95.3	0.0	-1.00	0.85	0.72	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20420	2430	12	30	2	0	0	logfile
✔	7UZX	26921	2024-07-21	2022-05-09	3.49	4.37	3.42	3.7	0.007	0.91	0.0	0.05	14.91	0.00	1.865	11.12	0.06	7.0	93.0	0.1	-0.88	0.82	0.72	1.88	3.7	0.004	0.83	1.0	0.04	16.54	0.00	2.063	10.54	2.00	4.0	96.0	0.0	0.60	1.82	0.88	0.83	1.54	14858	1760	9	36	0	0	0	logfile
✔	7XR4	33407	2024-07-20	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	15.58	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.003	0.53	0.0	0.04	14.73	0.00	2.235	9.81	1.43	1.2	98.8	0.0	3.16	1.09	0.71	0.85	1.42	10026	1278	9	0	27	0	0	logfile
✘	7UZE	26886	2024-07-21	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	14.97	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.87	6.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15105	988	12	0	4	113	7528	logfile
✔	7UZZ	26923	2024-07-22	2022-05-09	4.45	6.04	4.45	4.4	0.008	0.98	0.0	0.06	13.20	0.00	1.424	17.03	0.75	5.0	95.0	0.0	-0.66	0.84	0.70	—	4.4	0.002	0.58	0.0	0.04	13.49	0.00	2.095	13.63	0.05	3.4	96.6	0.0	0.58	2.36	0.91	0.83	—	19967	2380	11	30	0	0	0	logfile
✔	7ZSS	14947	2024-07-24	2022-05-08	2.63	3.05	2.80	3.0	0.004	0.70	0.0	0.05	15.00	0.01	2.130	6.50	0.00	5.4	94.4	0.2	-0.53	0.72	0.81	2.57	3.0	0.003	0.61	0.0	0.05	15.10	0.00	2.114	7.22	2.56	5.5	94.4	0.1	-0.35	0.50	0.68	0.79	2.43	25942	3236	16	0	46	0	0	logfile
✔	7UZ6	26880	2024-07-26	2022-05-08	2.8	3.35	2.92	3.3	0.004	0.56	0.0	0.04	13.21	0.00	2.055	9.49	0.03	3.6	96.4	0.0	-0.38	0.69	0.80	3.12	3.3	0.003	0.57	0.0	0.04	14.94	0.00	2.081	10.43	1.43	3.6	96.4	0.0	-0.18	0.38	0.63	0.76	2.76	30942	3906	12	0	39	0	0	logfile
✔	7UZ7	26881	2024-07-25	2022-05-08	2.9	3.46	3.07	3.4	0.005	0.61	0.0	0.04	13.46	0.01	2.121	9.12	0.00	3.5	96.5	0.0	0.04	0.71	0.78	2.76	3.4	0.004	0.60	0.0	0.04	14.50	0.00	2.176	9.88	1.60	3.8	96.1	0.0	0.03	0.36	0.69	0.80	2.48	30552	3861	15	0	45	0	0	logfile
✔	7UZA	26884	2024-07-24	2022-05-08	3.1	3.81	3.33	3.7	0.004	0.62	0.0	0.05	13.78	0.00	2.139	12.40	0.03	3.5	96.5	0.0	-0.15	0.74	0.74	2.08	3.7	0.003	0.61	0.0	0.05	14.18	0.00	2.171	12.89	1.71	4.0	96.0	0.0	-0.28	0.43	0.73	0.75	1.95	26992	3409	10	0	38	0	0	logfile
✔	7UZ4	26878	2024-07-26	2022-05-08	3.1	3.41	3.43	3.4	0.005	0.59	0.0	0.05	12.87	0.00	2.122	10.47	0.06	4.6	95.4	0.0	-0.34	0.66	0.81	2.43	3.4	0.004	0.65	1.0	0.05	13.94	0.00	2.153	10.52	1.75	3.8	96.2	0.0	-0.39	0.32	0.65	0.82	2.25	30762	3867	15	0	51	0	0	logfile
✔	7UZ8	26882	2024-07-25	2022-05-08	3.1	3.30	3.17	3.3	0.004	0.62	0.0	0.05	14.87	0.00	2.085	10.88	0.06	3.4	96.6	0.0	-0.23	0.68	0.79	3.12	3.3	0.002	0.58	0.0	0.04	14.61	0.00	2.185	10.66	1.40	3.3	96.7	0.0	-0.12	0.40	0.71	0.84	2.62	30075	3801	15	0	33	0	0	logfile
✔	7UZ9	26883	2024-07-26	2022-05-08	3.5	4.40	3.63	4.5	0.003	0.59	0.0	0.04	15.47	0.00	2.175	10.65	0.03	2.8	97.2	0.0	0.31	0.66	0.73	1.10	4.5	0.004	0.65	0.0	0.05	14.80	0.00	2.126	13.72	2.33	3.9	96.1	0.0	0.16	0.43	0.66	0.74	0.97	30669	3873	12	0	42	0	0	logfile
✔	7UZB	26885	2024-07-19	2022-05-08	4.1	4.79	4.12	4.2	0.003	0.60	0.0	0.04	14.48	0.00	2.037	14.67	0.00	3.6	96.4	0.0	0.43	0.90	0.81	—	4.2	0.002	0.56	0.0	0.04	12.73	0.00	2.103	12.72	0.00	3.7	96.3	0.0	0.13	0.94	0.90	0.80	—	8392	1077	4	0	4	0	0	logfile
✔	7UZ5	26879	2024-07-24	2022-05-08	3.2	3.83	3.46	3.7	0.004	0.61	0.0	0.05	14.16	0.00	2.126	9.50	0.07	2.7	97.3	0.0	0.31	0.72	0.80	2.40	3.7	0.003	0.55	0.0	0.05	14.08	0.00	2.130	9.38	1.41	2.7	97.3	0.0	0.47	0.91	0.72	0.82	2.12	27051	3397	8	0	48	0	0	logfile
✔	7XQ8	33390	2024-07-21	2022-05-07	3.3	3.57	3.29	3.5	0.005	0.76	0.0	0.13	14.24	0.01	1.664	13.03	1.23	6.5	92.9	0.6	-1.08	0.61	0.66	2.30	3.5	0.012	0.95	0.0	0.06	15.34	0.01	1.967	13.30	5.47	8.5	90.9	0.6	-0.99	1.15	0.67	0.78	2.17	12452	1889	10	0	14	0	0	logfile
✔	7XQi	33397	2024-07-20	2022-05-07	3.7	4.27	3.41	4.0	0.006	0.72	0.0	0.04	14.16	0.00	2.304	5.68	2.27	2.1	97.9	0.0	-2.27	0.76	0.86	3.63	3.9	0.003	0.63	0.0	0.04	15.48	0.00	2.192	4.70	1.61	4.4	95.6	0.0	2.67	0.64	0.77	0.85	3.66	9582	1176	6	0	0	0	0	logfile
✔	7XQG	33395	2024-07-20	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	12.11	0.00	2.268	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.76	0.0	0.04	14.99	0.00	2.292	8.46	3.15	3.2	96.8	0.0	2.44	0.73	0.79	0.85	1.25	10206	1206	12	0	12	0	0	logfile

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