Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XQJ	33398	2024-07-20	2022-05-07	4.0	4.56	3.73	4.2	0.007	0.84	0.0	0.05	15.98	0.01	2.401	6.40	6.01	6.5	93.5	0.0	-2.82	0.78	0.85	—	4.3	0.003	0.77	0.0	0.04	16.51	0.00	2.256	9.82	3.10	4.1	95.9	0.0	1.25	0.72	0.78	0.85	—	9960	1224	6	0	0	0	0	logfile
✔	7XQi	33397	2024-07-20	2022-05-07	3.7	4.27	3.41	4.0	0.006	0.72	0.0	0.04	14.16	0.00	2.304	5.68	2.27	2.1	97.9	0.0	-2.27	0.76	0.86	3.63	3.9	0.003	0.63	0.0	0.04	15.48	0.00	2.192	4.70	1.61	4.4	95.6	0.0	2.67	0.64	0.77	0.85	3.66	9582	1176	6	0	0	0	0	logfile
✔	7XQ9	33391	2024-07-22	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.49	0.0	0.03	15.74	0.00	2.205	3.13	1.53	2.1	97.9	0.0	3.38	0.48	0.53	0.83	2.56	19632	2412	12	0	0	0	0	logfile
✔	7ZSD	14930	2024-07-18	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	17.98	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.69	0.0	0.05	15.76	0.00	2.254	13.42	3.59	7.0	93.0	0.0	-0.45	0.40	0.38	0.77	0.96	2120	261	3	0	2	0	0	logfile
✔	7UY5	26863	2024-07-24	2022-05-06	3.5	3.20	3.49	3.3	0.002	0.46	0.0	0.04	18.10	0.00	2.182	6.99	0.04	2.8	97.2	0.0	0.64	0.76	0.72	1.86	3.3	0.002	0.51	0.0	0.04	19.02	0.00	2.138	8.50	1.87	3.1	96.9	0.0	0.66	0.41	0.77	0.75	1.70	25772	2690	13	170	2	0	0	logfile
✔	7UXU	26862	2024-07-19	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	17.35	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.002	0.52	0.0	0.04	17.12	0.00	2.279	1.37	0.41	2.5	97.5	0.0	1.25	1.30	0.54	0.86	4.02	8776	536	8	0	4	0	4268	logfile
✘	7UY7	26866	2024-07-21	2022-05-06	4.2	4.18	4.04	3.2	0.002	0.56	1.0	0.04	15.12	0.00	2.203	13.96	0.18	3.8	96.2	0.0	-0.53	0.73	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15161	1808	7	10	1	0	0	logfile
✔	7UY8	26867	2024-07-20	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.64	0.0	0.04	14.41	0.00	2.222	15.98	0.00	4.8	95.1	0.1	-0.31	1.40	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✔	7XPX	33385	2024-07-21	2022-05-06	3.2	3.32	3.18	3.3	0.004	0.61	0.0	0.04	27.53	0.00	2.185	10.26	0.00	3.6	96.4	0.0	0.82	0.67	0.79	2.86	3.3	0.004	0.54	0.0	0.03	27.28	0.00	2.215	9.12	2.30	2.8	97.2	0.0	2.04	1.06	0.57	0.78	2.30	13408	934	12	290	1	0	0	logfile
✔	7XQ1	33388	2024-07-18	2022-05-06	3.4	3.32	3.36	3.5	0.010	1.05	1.0	0.06	13.48	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.62	0.0	0.04	14.56	0.00	2.294	7.73	2.32	2.0	98.0	0.0	0.91	1.18	0.49	0.81	2.18	3302	400	2	0	2	0	0	logfile
✔	7UY6	26865	2024-07-22	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	18.33	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.002	0.50	0.0	0.04	19.72	0.00	2.205	5.37	2.23	2.4	97.6	0.1	1.39	0.42	0.70	0.84	2.66	18746	1847	9	170	1	0	0	logfile
✔	7XQ0	33387	2024-07-18	2022-05-06	3.0	2.77	3.09	3.2	0.014	1.26	0.0	0.06	13.01	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	0.64	0.0	0.04	14.03	0.00	2.141	8.09	2.59	1.3	98.7	0.0	1.47	1.12	0.43	0.77	2.98	3320	402	2	0	2	0	0	logfile
✔	7XPZ	33386	2024-07-18	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.64	0.0	0.04	14.24	0.00	2.187	7.80	2.88	4.0	96.0	0.0	-0.85	1.15	0.45	0.78	2.16	3227	402	1	0	0	0	0	logfile
✔	7UXF	26860	2024-07-22	2022-05-05	2.7	2.95	2.73	3.0	0.008	0.81	1.0	0.05	14.77	0.01	1.983	6.62	1.71	1.9	98.1	0.0	0.24	0.66	0.86	4.48	3.0	0.004	0.61	0.0	0.05	16.36	0.00	1.923	6.25	1.50	1.9	98.1	0.0	1.16	0.38	0.62	0.85	4.07	17556	2220	18	0	12	60	0	logfile
✔	7UXA	26856	2024-07-19	2022-05-05	3.28	3.56	3.32	3.5	0.003	0.58	0.0	0.04	16.77	0.00	2.084	7.47	0.88	5.2	94.8	0.0	-0.97	0.78	0.82	2.37	3.5	0.004	0.89	1.0	0.04	18.19	0.00	2.062	10.39	2.05	4.1	95.9	0.0	0.23	0.54	0.77	0.80	1.65	8120	820	6	78	2	0	0	logfile
✘	7ZRZ	14923	2024-07-19	2022-05-05	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.27	—	—	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	0.09	—	—	—	1.73	6580	617	5	77	0	0	0	logfile
✔	7UXE	26858	2024-07-19	2022-05-05	3.38	3.63	3.46	3.9	0.005	0.86	0.0	0.04	19.49	0.01	2.026	14.38	2.00	14.2	85.8	0.0	-2.79	0.58	0.77	1.31	3.9	0.005	0.76	0.0	0.04	18.64	0.00	2.193	10.19	3.70	14.4	85.6	0.0	-0.15	0.75	0.56	0.77	1.61	9480	1150	10	0	0	0	0	logfile
✔	7ZRV	14922	2024-07-25	2022-05-05	2.8	3.68	3.14	3.4	0.004	0.63	0.0	0.05	18.63	0.00	2.089	9.52	0.00	4.7	95.1	0.2	-0.19	0.79	0.82	2.37	3.4	0.003	0.64	0.0	0.05	14.69	0.00	2.109	10.86	1.51	5.4	94.5	0.1	-0.28	0.46	0.75	0.80	2.10	28055	3429	38	0	88	0	0	logfile
✔	7ZRH	14914	2024-07-20	2022-05-04	3.4	3.53	3.41	3.5	0.004	0.75	0.0	0.05	15.89	0.01	2.242	6.63	0.00	4.2	95.8	0.0	-1.07	0.71	0.83	2.05	3.5	0.003	0.57	0.0	0.04	15.83	0.00	2.194	11.52	1.67	4.1	95.9	0.0	0.53	1.06	0.71	0.86	1.79	11014	1450	6	0	9	0	0	logfile
✔	7ZRL	14918	2024-07-20	2022-05-04	4.0	3.62	3.94	3.9	0.005	0.91	0.0	0.05	14.30	0.01	2.197	9.04	0.00	5.0	95.0	0.0	-1.26	0.66	0.79	—	3.9	0.003	0.66	0.0	0.04	16.34	0.00	2.197	15.43	2.48	4.8	95.1	0.1	0.58	0.42	0.67	0.81	—	10782	1447	5	0	1	0	0	logfile

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