Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZRH	14914	2024-07-20	2022-05-04	3.4	3.53	3.41	3.5	0.004	0.75	0.0	0.05	15.89	0.01	2.242	6.63	0.00	4.2	95.8	0.0	-1.07	0.71	0.83	2.05	3.5	0.003	0.57	0.0	0.04	15.83	0.00	2.194	11.52	1.67	4.1	95.9	0.0	0.53	1.06	0.71	0.86	1.79	11014	1450	6	0	9	0	0	logfile
✔	7ZRE	14912	2024-07-20	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	16.34	0.01	2.231	7.35	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.003	0.59	0.0	0.04	16.64	0.00	2.141	11.32	1.41	4.0	96.0	0.0	0.76	0.29	0.62	0.81	2.10	10996	1447	6	0	11	0	0	logfile
✔	7ZRL	14918	2024-07-20	2022-05-04	4.0	3.62	3.94	3.9	0.005	0.91	0.0	0.05	14.30	0.01	2.197	9.04	0.00	5.0	95.0	0.0	-1.26	0.66	0.79	—	3.9	0.003	0.66	0.0	0.04	16.34	0.00	2.197	15.43	2.48	4.8	95.1	0.1	0.58	0.42	0.67	0.81	—	10782	1447	5	0	1	0	0	logfile
✔	7ZRG	14913	2024-07-20	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.91	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.003	0.56	0.0	0.04	16.82	0.00	2.167	10.49	2.12	4.2	95.8	0.0	0.64	0.31	0.64	0.82	1.21	11032	1448	6	0	10	0	0	logfile
✔	7ZRM	14919	2024-07-20	2022-05-04	3.7	3.18	3.69	3.5	0.004	0.81	0.0	0.05	14.87	0.01	2.260	7.18	0.00	5.1	94.9	0.0	-1.35	0.64	0.79	0.91	3.5	0.002	0.58	0.0	0.04	16.41	0.00	2.238	11.54	1.76	4.9	95.1	0.0	0.47	1.06	0.64	0.80	0.78	10839	1450	6	0	7	0	0	logfile
✔	7ZRJ	14916	2024-07-20	2022-05-04	3.7	3.78	3.64	3.7	0.004	0.80	0.0	0.05	16.08	0.01	2.179	8.23	0.00	4.3	95.7	0.0	-1.26	0.70	0.82	1.66	3.7	0.002	0.59	0.0	0.04	16.44	0.00	2.228	12.95	1.32	4.3	95.7	0.0	0.49	1.05	0.70	0.83	1.47	11009	1449	6	0	9	0	0	logfile
✔	7ZRK	14917	2024-07-20	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	16.23	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.56	0.0	0.04	16.43	0.00	2.159	9.41	1.06	3.9	96.1	0.0	1.27	0.27	0.62	0.83	2.25	11050	1450	6	0	15	0	0	logfile
✔	7ZRi	14915	2024-07-20	2022-05-04	3.5	3.62	3.50	3.6	0.006	0.92	0.0	0.05	16.16	0.01	2.196	7.56	0.00	4.6	95.4	0.0	-1.22	0.70	0.82	1.47	3.6	0.003	0.57	0.0	0.04	16.32	0.00	2.158	10.98	1.85	4.7	95.3	0.0	0.71	0.27	0.70	0.83	1.32	11014	1450	6	0	9	0	0	logfile
✔	7UX1	26845	2024-07-25	2022-05-04	3.48	2.70	3.65	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.004	0.60	0.0	0.04	13.43	0.00	1.976	8.13	4.71	3.6	96.4	0.0	1.88	0.44	0.77	0.77	1.53	28931	4991	7	0	0	0	0	logfile
✔	7ZR5	14883	2024-07-22	2022-05-03	3.9	2.55	4.11	2.3	0.009	1.02	1.0	0.04	16.99	0.01	2.119	9.63	0.26	9.1	90.3	0.5	-1.57	0.70	0.70	1.62	2.3	0.004	0.69	0.0	0.04	17.88	0.00	2.131	9.83	3.53	9.3	90.3	0.3	-1.24	0.95	0.70	0.71	1.37	17518	2145	7	0	2	0	0	logfile
✔	7ZR0	14875	2024-07-21	2022-05-03	3.4	2.38	3.28	2.2	0.007	1.00	0.0	0.05	19.99	0.01	2.011	10.56	0.19	10.1	89.3	0.6	-2.37	0.78	0.78	1.91	2.2	0.004	0.90	0.0	0.04	20.07	0.00	2.107	9.00	5.28	10.1	89.5	0.4	-1.50	0.93	0.75	0.77	1.99	14052	1716	6	0	2	0	0	logfile
✔	7UWL	26835	2024-07-20	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.003	0.78	0.0	0.05	16.71	0.00	2.099	14.75	5.05	7.1	92.9	0.0	-1.54	0.41	0.68	0.65	1.61	10100	1236	16	0	22	0	0	logfile
✔	7UWQ	26838	2024-07-23	2022-05-03	3.05	3.55	3.19	3.5	0.005	0.57	0.0	0.04	13.81	0.00	2.313	3.18	0.00	3.0	97.0	0.0	-0.63	0.70	0.86	3.23	3.5	0.002	0.47	0.0	0.04	15.07	0.00	2.280	4.63	0.96	1.4	98.6	0.0	0.58	0.24	0.72	0.87	2.48	20538	2598	6	0	0	0	0	logfile
✔	7ZR7	14885	2024-07-27	2022-05-03	3.7	4.34	3.77	3.8	0.004	0.54	0.0	0.05	10.30	0.00	2.034	6.13	0.75	3.7	96.3	0.0	-0.63	0.85	0.79	1.17	3.8	0.003	0.60	0.0	0.04	12.32	0.00	2.100	11.35	1.99	2.7	97.2	0.0	0.41	0.74	0.86	0.82	1.13	30764	3878	24	0	54	0	0	logfile
✔	7UWF	26831	2024-07-21	2022-05-03	2.7	2.78	2.77	2.7	0.004	0.62	0.0	0.04	12.06	0.01	2.127	6.27	0.00	3.0	97.0	0.0	1.46	0.77	0.82	2.47	2.7	0.004	0.65	0.0	0.04	15.60	0.00	2.060	7.63	2.15	3.0	97.0	0.0	1.77	0.37	0.78	0.85	2.66	13174	1760	4	0	0	0	0	logfile
✔	7UWC	26828	2024-07-28	2022-05-03	4.0	4.38	4.18	2.5	0.005	0.70	1.0	0.05	10.20	0.00	2.216	5.60	0.50	5.0	94.8	0.2	1.98	0.76	0.74	—	2.3	0.002	0.54	0.0	0.04	11.38	0.00	2.129	6.46	1.34	4.0	95.9	0.1	2.35	0.37	0.82	0.84	—	46123	7764	31	0	56	0	0	logfile
✔	7UW9	26825	2024-07-28	2022-05-03	4.2	4.40	4.30	2.2	0.003	0.62	2.0	0.04	10.30	0.00	2.207	7.60	1.21	3.9	96.0	0.1	2.14	0.79	0.78	—	2.1	0.002	0.54	0.0	0.04	10.11	0.00	2.148	7.79	0.00	4.5	95.5	0.1	2.29	1.67	0.80	0.79	—	46156	7764	31	0	56	0	0	logfile
✔	7UWK	26834	2024-07-21	2022-05-03	4.4	3.30	4.35	2.2	0.004	0.80	0.0	0.05	12.35	0.01	2.131	18.13	0.11	5.0	95.0	0.0	-1.76	0.66	0.54	—	2.3	0.004	0.78	0.0	0.05	12.79	0.01	2.098	20.82	0.06	7.0	93.0	0.0	-1.88	1.85	0.66	0.57	—	16064	2059	12	0	0	0	0	logfile
✔	7XP6	33366	2024-07-19	2022-05-03	3.01	2.40	3.14	2.1	0.003	0.59	0.0	0.04	13.31	0.01	2.100	7.69	0.00	2.6	97.4	0.0	1.78	0.74	0.75	2.85	2.1	0.004	0.59	0.0	0.04	15.06	0.00	2.216	8.54	3.30	3.3	96.7	0.0	1.73	0.43	0.76	0.79	2.69	8336	1051	6	0	1	0	0	logfile
✔	7XP5	33365	2024-07-19	2022-05-03	3.08	2.39	3.13	2.1	0.004	0.59	0.0	0.04	12.66	0.00	2.198	8.66	0.00	3.1	96.9	0.0	1.69	0.74	0.75	2.94	2.1	0.004	0.59	0.0	0.04	15.44	0.00	2.113	8.66	2.84	3.2	96.8	0.0	1.66	1.10	0.75	0.78	2.21	8381	1059	5	0	0	0	0	logfile

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