Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZR8	14886	2024-07-18	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.58	0.0	0.04	12.94	0.00	2.179	10.32	3.47	4.9	95.1	0.0	-0.91	0.49	0.72	0.82	2.17	3693	471	4	0	1	0	0	logfile
✔	7UWH	26832	2024-07-25	2022-05-03	3.1	3.48	3.32	3.3	0.003	0.70	0.0	0.05	15.82	0.00	2.114	11.51	0.81	5.5	94.3	0.1	-0.96	0.81	0.77	2.03	3.3	0.003	0.60	0.0	0.04	16.76	0.00	1.913	10.66	1.82	5.1	94.9	0.0	-0.19	1.66	0.85	0.87	1.94	27927	3362	10	80	3	0	0	logfile
✔	7UWS	26841	2024-07-27	2022-05-03	3.47	3.83	3.35	3.8	0.003	0.65	0.0	0.04	15.94	0.00	2.196	11.83	0.12	6.3	93.7	0.0	-1.19	0.62	0.79	1.77	3.8	0.003	0.64	0.0	0.04	17.67	0.00	2.090	13.83	2.02	6.4	93.6	0.0	-0.81	0.41	0.63	0.81	1.63	39416	4766	20	68	0	0	0	logfile
✔	7ZR1	14881	2024-07-25	2022-05-03	4.0	4.42	—	4.1	0.006	0.91	5.0	0.05	13.26	0.01	1.888	1.13	0.59	3.0	97.0	0.0	0.71	0.84	0.70	—	4.1	0.003	0.75	0.0	0.04	15.34	0.00	1.448	15.49	1.72	2.5	97.5	0.0	1.34	0.80	0.88	0.81	—	21793	2686	9	0	8	0	0	logfile
✔	7UWE	26830	2024-07-24	2022-05-03	2.9	3.49	2.92	3.2	0.004	0.75	0.0	0.05	14.00	0.00	2.097	8.35	0.67	4.4	95.5	0.1	-0.75	0.80	0.73	2.06	3.2	0.005	0.81	0.0	0.05	16.17	0.00	1.990	11.51	1.44	4.7	95.3	0.0	-0.26	2.04	0.87	0.90	2.36	27327	3349	10	56	3	0	0	logfile
✔	7UWL	26835	2024-07-20	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.003	0.78	0.0	0.05	16.71	0.00	2.099	14.75	5.05	7.1	92.9	0.0	-1.54	0.41	0.68	0.65	1.61	10100	1236	16	0	22	0	0	logfile
✔	7UWN	26837	2024-07-20	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.003	0.59	0.0	0.04	16.58	0.00	2.136	12.43	4.68	5.3	94.7	0.0	-0.89	0.30	0.66	0.63	0.69	10602	1325	12	0	11	0	0	logfile
✔	7UWM	26836	2024-07-19	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	17.88	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.8	0.004	0.61	0.0	0.05	17.82	0.00	2.115	8.15	5.05	3.8	96.2	0.0	-0.66	0.23	0.80	0.80	2.51	7972	967	9	0	9	0	0	logfile
✔	7XP4	33364	2024-07-19	2022-05-03	3.01	2.36	3.08	2.2	0.003	0.58	0.0	0.04	12.47	0.00	2.204	9.62	0.00	2.9	97.0	0.1	0.87	0.75	0.75	2.96	2.2	0.003	0.59	0.0	0.04	15.41	0.00	2.104	9.62	2.71	3.0	97.0	0.0	1.24	0.41	0.76	0.78	1.99	8437	1066	5	0	0	0	0	logfile
✔	7XP6	33366	2024-07-19	2022-05-03	3.01	2.40	3.14	2.1	0.003	0.59	0.0	0.04	13.31	0.01	2.100	7.69	0.00	2.6	97.4	0.0	1.78	0.74	0.75	2.85	2.1	0.004	0.59	0.0	0.04	15.06	0.00	2.216	8.54	3.30	3.3	96.7	0.0	1.73	0.43	0.76	0.79	2.69	8336	1051	6	0	1	0	0	logfile
✔	7XP5	33365	2024-07-19	2022-05-03	3.08	2.39	3.13	2.1	0.004	0.59	0.0	0.04	12.66	0.00	2.198	8.66	0.00	3.1	96.9	0.0	1.69	0.74	0.75	2.94	2.1	0.004	0.59	0.0	0.04	15.44	0.00	2.113	8.66	2.84	3.2	96.8	0.0	1.66	1.10	0.75	0.78	2.21	8381	1059	5	0	0	0	0	logfile
✔	7UWJ	26833	2024-07-19	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.65	0.0	0.04	14.99	0.01	2.243	9.91	3.01	5.6	94.4	0.0	-2.12	0.46	0.68	0.65	2.01	5314	664	6	0	6	0	0	logfile
✔	7UWA	26826	2024-07-28	2022-05-03	4.3	4.39	4.41	2.3	0.003	0.61	1.0	0.04	10.20	0.00	2.202	7.93	1.05	3.8	96.1	0.0	2.06	0.79	0.79	—	2.1	0.004	0.58	0.0	0.04	10.13	0.00	2.120	9.04	0.00	5.7	94.3	0.0	2.06	1.63	0.82	0.83	—	46194	7772	31	0	56	0	0	logfile
✔	7ZQS	14874	2024-07-20	2022-05-02	2.54	3.28	2.59	3.0	0.004	0.57	0.0	0.04	18.00	0.00	2.257	5.71	0.00	2.4	97.6	0.0	1.32	0.88	0.91	5.01	3.0	0.003	0.50	0.0	0.04	18.37	0.00	2.170	5.71	0.00	2.2	97.8	0.0	1.97	0.22	0.86	0.90	4.34	11354	1278	12	60	14	0	0	logfile
✔	7UW5	26823	2024-07-26	2022-05-02	3.84	2.49	3.83	3.3	0.002	0.50	0.0	0.04	14.55	0.00	2.218	5.79	0.35	1.6	98.4	0.0	4.16	0.72	0.68	1.15	2.2	0.003	0.64	1.0	0.04	15.64	0.00	2.144	6.04	6.82	1.8	98.0	0.2	3.86	0.46	0.72	0.68	1.25	32340	5061	7	0	0	0	0	logfile
✔	7UVL	26813	2024-07-22	2022-05-02	3.56	4.29	3.57	3.8	0.003	0.56	0.0	0.04	12.92	0.00	2.161	13.72	0.00	5.2	94.8	0.0	-0.68	0.90	0.82	1.57	3.8	0.006	0.70	0.0	0.04	14.82	0.00	2.037	19.62	1.62	7.4	92.6	0.0	-0.87	0.39	0.90	0.83	1.09	16508	2154	5	0	0	0	0	logfile
✔	7UVK	26812	2024-07-20	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.006	0.74	0.0	0.05	16.43	0.00	2.066	12.42	3.75	10.4	89.6	0.0	-2.42	1.08	0.71	0.88	2.77	10350	1295	1	0	0	0	0	logfile
✔	7UVP	26815	2024-07-19	2022-05-02	3.7	3.39	3.39	3.5	0.002	0.51	0.0	0.04	15.71	0.00	1.942	7.42	0.00	5.0	95.0	0.0	-1.10	0.61	0.77	2.40	3.6	0.003	0.59	0.0	0.04	17.62	0.00	1.885	11.66	2.77	4.3	95.7	0.0	-0.67	1.14	0.61	0.76	1.93	5671	718	2	0	2	1	0	logfile
✔	7UVT	26816	2024-07-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.99	0.01	1.910	21.84	0.00	0.0	0.0	0.0	—	0.48	0.77	0.77	—	12409	0	1	386	0	0	4149	logfile
✔	7ZQP	14873	2024-07-22	2022-05-02	3.6	2.97	3.42	3.0	0.003	0.48	0.0	0.04	13.61	0.00	2.048	5.00	0.00	3.8	96.2	0.0	-0.86	0.64	0.80	2.81	3.0	0.006	0.66	0.0	0.05	15.71	0.00	2.121	10.05	2.93	5.6	94.4	0.0	-1.19	0.41	0.64	0.80	2.67	18315	2289	6	0	0	0	0	logfile

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