Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7Xo8	33340	2024-07-27	2022-05-01	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39126	4863	12	0	45	0	0	logfile
✔	7XoC	33344	2024-07-19	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.49	0.0	0.04	10.96	0.00	2.149	5.34	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.66	0.0	0.04	15.64	0.00	2.076	8.28	2.20	3.1	96.9	0.0	0.97	1.37	0.76	0.82	3.23	6432	786	5	0	5	0	0	logfile
✔	7XoP	33355	2024-07-18	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.63	0.0	0.04	13.18	0.00	2.180	10.73	0.25	1.1	98.9	0.0	1.87	0.40	0.59	0.89	2.88	3855	524	1	0	0	0	0	logfile
✔	7XoB	33343	2024-07-26	2022-05-01	3.3	2.37	3.35	2.1	0.005	0.92	12.0	0.08	13.73	0.01	1.329	8.08	0.57	4.9	95.0	0.2	-3.07	0.57	0.43	1.44	2.1	0.004	0.76	0.0	0.05	16.10	0.00	2.121	12.61	2.90	5.0	95.0	0.0	-0.96	1.24	0.74	0.78	2.17	34108	4260	10	0	39	0	0	logfile
✔	7Xoo	33354	2024-07-18	2022-05-01	3.0	3.53	2.84	3.3	0.003	0.46	0.0	0.04	11.95	0.00	2.333	7.79	0.00	1.1	98.9	0.0	2.57	0.58	0.89	1.90	3.3	0.003	0.52	0.0	0.04	13.74	0.00	2.327	6.77	0.74	1.3	98.7	0.0	2.75	0.43	0.58	0.90	2.19	3855	524	1	0	0	0	0	logfile
✔	7Xo6	33338	2024-07-19	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.23	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.1	0.003	0.59	0.0	0.04	17.05	0.00	2.100	8.66	1.46	2.2	97.8	0.0	0.69	1.56	0.78	0.82	3.13	6440	786	5	0	5	0	0	logfile
✔	7XoD	33345	2024-07-27	2022-05-01	3.27	2.34	3.34	2.1	0.003	0.60	1.0	0.05	13.94	0.00	1.716	4.08	0.16	4.8	95.2	0.0	-2.45	0.68	0.69	2.09	2.1	0.009	1.01	1.0	0.05	15.96	0.01	1.914	12.40	3.79	6.8	93.2	0.0	-1.16	1.01	0.72	0.77	2.43	36173	4742	17	0	39	0	0	logfile
✔	7XoR	33357	2024-07-18	2022-05-01	3.3	3.57	3.01	3.4	0.003	0.52	0.0	0.04	12.60	0.00	2.273	9.71	0.00	1.3	98.7	0.0	2.15	0.56	0.86	2.32	3.4	0.003	0.52	0.0	0.04	14.40	0.00	2.258	10.85	1.49	1.1	98.9	0.0	2.14	0.37	0.59	0.88	2.14	3855	524	1	0	0	0	0	logfile
✔	7XoG	33347	2024-07-19	2022-05-01	3.5	4.22	3.58	3.7	0.051	2.66	18.0	0.11	17.98	0.01	1.481	13.64	2.61	5.8	94.2	0.0	-2.67	0.75	0.63	1.50	3.8	0.025	0.93	0.0	0.04	16.17	0.01	2.088	10.52	2.61	4.4	95.5	0.1	1.19	2.02	0.86	0.83	1.64	8808	1044	21	0	57	0	0	logfile
✘	7Xo9	33341	2024-07-19	2022-05-01	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6483	793	3	0	5	0	0	logfile
✔	7Xo5	33337	2024-07-25	2022-05-01	3.13	2.30	3.19	2.1	0.005	0.94	1.0	0.06	15.28	0.01	1.796	3.97	0.07	5.0	95.0	0.0	-4.22	0.71	0.71	1.77	2.1	0.004	0.69	0.0	0.05	16.29	0.00	2.148	9.90	3.02	4.4	95.6	0.0	-0.67	1.34	0.75	0.79	2.20	28503	3659	8	0	38	0	0	logfile
✔	7XoA	33342	2024-07-25	2022-05-01	3.2	2.32	3.20	2.1	0.003	0.56	0.0	0.04	9.80	0.01	1.863	8.79	0.06	2.8	97.2	0.1	-2.65	0.59	0.48	1.63	2.0	0.004	0.66	0.0	0.04	14.09	0.00	2.138	9.55	2.53	4.6	95.4	0.0	-0.89	0.80	0.73	0.77	2.43	29202	3670	8	0	35	0	0	logfile
✘	7Xo7	33339	2024-07-26	2022-05-01	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34209	4267	10	0	43	0	0	logfile
✔	7XoE	33346	2024-07-24	2022-05-01	3.9	4.40	3.91	3.9	0.011	1.49	6.0	0.10	21.16	0.01	1.596	15.70	15.63	13.6	85.3	1.1	-4.45	0.82	0.80	0.94	3.9	0.004	0.75	0.0	0.04	16.50	0.00	2.180	13.68	3.83	8.6	91.3	0.1	-1.59	1.46	0.83	0.83	1.22	25587	3210	18	0	45	0	0	logfile
✔	7XoH	33348	2024-07-21	2022-05-01	3.6	3.64	3.56	3.6	0.004	0.58	0.0	0.04	12.55	0.00	2.005	32.89	4.34	10.6	89.3	0.1	-4.16	0.72	0.83	2.38	3.6	0.003	0.67	0.0	0.04	14.89	0.00	2.120	10.07	3.13	7.3	92.7	0.0	-1.39	0.55	0.73	0.83	2.36	13524	1832	8	0	4	0	0	logfile
✔	7XoN	33353	2024-07-18	2022-05-01	3.1	3.66	2.94	3.3	0.002	0.47	0.0	0.04	12.44	0.00	2.325	9.45	0.00	1.5	98.5	0.0	2.61	0.57	0.88	2.21	3.3	0.004	0.52	0.0	0.04	13.80	0.00	2.294	9.32	1.24	1.3	98.7	0.0	2.64	0.41	0.59	0.91	2.40	3855	524	1	0	0	0	0	logfile
✔	7XoS	33358	2024-07-18	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	3.3	0.002	0.62	0.0	0.04	15.45	0.00	2.186	11.62	1.73	1.0	99.0	0.0	1.93	0.42	0.55	0.86	2.24	3855	524	1	0	0	0	0	logfile
✔	7XoQ	33356	2024-07-18	2022-05-01	3.3	3.58	3.06	3.4	0.003	0.54	0.0	0.04	11.31	0.00	2.277	8.56	0.00	1.0	99.0	0.0	2.13	0.56	0.85	2.21	3.4	0.002	0.52	0.0	0.04	14.45	0.00	2.347	8.04	1.24	1.0	99.0	0.0	2.53	0.38	0.58	0.87	1.52	3855	524	1	0	0	0	0	logfile
✔	7XoW	33361	2024-07-19	2022-05-01	3.1	3.48	3.17	3.6	0.005	0.86	0.0	0.05	13.16	0.01	2.198	9.68	0.11	4.7	95.3	0.0	-2.76	0.57	0.74	2.81	3.6	0.003	0.65	0.0	0.04	15.38	0.00	2.207	8.03	2.80	4.9	95.1	0.0	-0.08	1.14	0.54	0.73	1.95	8566	1122	6	0	0	0	0	logfile
✔	7XoU	33359	2024-07-19	2022-05-01	3.2	3.39	3.29	3.4	0.004	0.71	0.0	0.04	13.47	0.00	2.205	11.37	0.11	5.1	94.9	0.0	-3.52	0.56	0.66	1.65	3.5	0.003	0.70	0.0	0.04	16.24	0.00	2.168	13.49	2.89	5.5	94.5	0.0	-0.82	0.59	0.56	0.68	1.42	8247	1043	7	0	1	0	0	logfile

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