Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XoA	33342	2024-07-25	2022-05-01	3.2	2.32	3.20	2.1	0.003	0.56	0.0	0.04	9.80	0.01	1.863	8.79	0.06	2.8	97.2	0.1	-2.65	0.59	0.48	1.63	2.0	0.004	0.66	0.0	0.04	14.09	0.00	2.138	9.55	2.53	4.6	95.4	0.0	-0.89	0.80	0.73	0.77	2.43	29202	3670	8	0	35	0	0	logfile
✔	7Xo2	33334	2024-07-18	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.009	0.69	0.0	0.06	19.10	0.00	2.285	4.76	4.65	9.4	90.6	0.0	-1.72	1.12	0.51	0.89	6.72	2550	372	6	0	0	0	0	logfile
✔	7Xo1	33333	2024-07-18	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.007	0.66	0.0	0.05	18.46	0.00	2.280	3.05	1.55	8.3	91.7	0.0	-2.15	0.32	0.44	0.87	5.88	2550	372	6	0	0	0	0	logfile
✔	7XNZ	33331	2024-07-21	2022-04-30	3.6	3.72	3.56	3.7	0.004	0.60	0.0	0.04	13.12	0.00	2.146	35.80	3.42	12.0	87.7	0.3	-3.94	0.74	0.83	2.51	3.7	0.003	0.65	0.0	0.04	15.52	0.00	2.170	10.63	3.77	4.6	95.3	0.1	-0.22	0.69	0.75	0.84	1.64	13524	1832	8	0	4	0	0	logfile
✔	7Xo3	33335	2024-07-18	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.004	0.57	0.0	0.05	16.17	0.00	2.274	2.63	3.03	11.7	88.3	0.0	-1.86	0.39	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	7Xo4	33336	2024-07-26	2022-04-30	3.24	2.35	3.35	2.1	0.002	0.50	0.0	0.04	11.87	0.00	1.184	7.12	0.00	2.0	98.0	0.0	-2.83	0.52	0.40	1.77	2.1	0.004	0.82	2.0	0.05	14.11	0.00	2.098	9.75	2.87	4.1	95.9	0.0	-0.64	1.06	0.70	0.77	2.06	33410	4252	10	0	41	0	0	logfile
✔	7Xo0	33332	2024-07-18	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.005	0.49	0.0	0.05	17.10	0.00	2.237	6.29	2.71	9.2	90.8	0.0	-2.93	0.30	0.47	0.88	6.95	2550	372	6	0	0	0	0	logfile
✔	7XNQ	33323	2024-07-24	2022-04-29	3.52	3.71	3.54	3.6	0.004	0.63	0.0	0.05	14.68	0.00	2.121	11.63	0.49	6.0	93.9	0.1	-2.00	0.75	0.76	1.64	3.6	0.005	0.66	0.0	0.05	14.67	0.00	2.080	11.53	2.18	7.5	92.5	0.0	-1.62	1.18	0.80	0.81	1.70	26463	3267	24	0	69	0	0	logfile
✔	7XNo	33321	2024-07-21	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.53	0.0	0.04	12.89	0.00	2.215	5.72	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.12	0.00	2.208	5.81	1.27	5.2	94.7	0.1	1.79	0.27	0.69	0.87	2.94	15888	2085	15	0	3	0	0	logfile
✔	7XNR	33324	2024-07-24	2022-04-29	3.49	3.73	3.52	3.7	0.004	0.63	0.0	0.05	15.33	0.00	2.085	8.92	0.00	7.2	92.8	0.0	-1.28	0.75	0.73	1.89	3.7	0.003	0.63	0.0	0.05	14.72	0.00	2.146	8.21	1.58	6.3	93.7	0.0	-1.08	0.69	0.80	0.84	1.98	26460	3285	21	0	57	0	0	logfile
✔	7UUW	26805	2024-07-24	2022-04-29	3.36	3.61	3.51	3.6	0.007	0.75	0.0	0.05	17.00	0.00	2.202	7.09	1.34	3.1	96.9	0.0	-0.17	0.67	0.86	3.53	3.6	0.005	0.60	0.0	0.04	16.58	0.00	2.115	5.84	1.23	2.4	97.6	0.0	0.77	0.32	0.66	0.87	2.99	24852	3174	18	0	12	0	0	logfile
✘	7UV0	26808	2024-07-18	2022-04-29	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3784	501	2	0	4	0	0	logfile
✔	7UUY	26806	2024-07-18	2022-04-29	3.3	3.47	3.28	3.5	0.004	0.58	0.0	0.04	13.50	0.00	2.067	5.68	0.25	5.5	94.5	0.0	0.72	0.61	0.84	2.03	3.5	0.003	0.63	0.0	0.04	15.02	0.00	2.204	7.49	2.52	4.6	95.4	0.0	2.01	1.13	0.59	0.83	1.74	3809	503	2	0	1	0	0	logfile
✘	7XNV	33327	2024-07-22	2022-04-29	3.4	3.18	3.11	3.2	0.005	1.07	0.0	0.05	16.87	0.00	2.213	7.73	0.90	1.0	98.4	0.6	0.24	0.69	0.85	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18378	2088	24	0	114	0	0	logfile
✘	7UV9	26809	2024-07-21	2022-04-29	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15342	1164	12	292	2	0	0	logfile
✔	7XNP	33322	2024-07-20	2022-04-29	2.9	2.50	2.96	2.9	0.005	0.75	0.0	0.04	27.19	0.01	2.297	2.36	0.00	2.1	97.9	0.0	-0.95	0.72	0.77	3.05	2.9	0.004	0.60	0.0	0.04	27.99	0.00	2.172	6.33	2.42	2.1	97.9	0.0	2.03	0.26	0.72	0.80	3.04	10943	746	10	246	0	0	0	logfile
✔	7XNK	33317	2024-07-26	2022-04-29	2.6	3.10	2.61	3.2	0.020	1.10	0.0	0.09	12.81	0.01	2.092	1.62	0.73	3.1	96.9	0.0	-1.76	0.61	0.79	3.72	3.1	0.003	0.67	1.0	0.09	16.82	0.00	2.060	6.67	0.91	1.3	98.7	0.0	2.76	1.06	0.58	0.79	2.84	31500	1968	12	0	8	0	15652	logfile
✔	7XNS	33325	2024-07-24	2022-04-29	3.48	3.93	3.54	3.8	0.004	0.65	0.0	0.05	15.42	0.00	2.252	6.45	0.00	4.8	95.2	0.0	-0.65	0.79	0.78	2.56	3.8	0.002	0.58	0.0	0.04	14.80	0.00	2.158	5.38	2.17	4.1	95.9	0.0	-0.47	0.54	0.82	0.83	2.16	26595	3285	24	0	66	0	0	logfile
✔	7UUQ	26800	2024-07-18	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.50	13.0	0.23	31.72	0.03	1.583	56.84	19.23	66.1	31.0	3.0	-10.80	0.67	0.73	0.90	3.63	4760	364	98	0	98	0	0	logfile
✔	7UTZ	26795	2024-07-23	2022-04-28	2.4	2.07	—	2.4	0.004	0.69	0.0	0.04	12.46	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.003	0.59	0.0	0.04	15.02	0.00	1.921	8.80	2.02	3.5	96.5	0.0	-0.07	0.77	0.72	0.76	3.78	23679	1536	10	0	8	0	11632	logfile

• ← previous
• Page 246 of 579
• next →