Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZPo	14859	2024-07-21	2022-04-28	3.24	2.81	3.17	3.1	0.004	0.73	0.0	0.05	16.16	0.00	2.053	10.37	0.00	1.3	98.7	0.0	1.71	0.65	0.82	2.73	3.1	0.004	0.71	0.0	0.05	16.66	0.00	1.893	10.96	2.82	2.8	97.2	0.0	2.09	1.61	0.66	0.87	2.30	15102	1932	20	0	16	0	0	logfile
✔	7UTZ	26795	2024-07-23	2022-04-28	2.4	2.07	—	2.4	0.004	0.69	0.0	0.04	12.46	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.003	0.59	0.0	0.04	15.02	0.00	1.921	8.80	2.02	3.5	96.5	0.0	-0.07	0.77	0.72	0.76	3.78	23679	1536	10	0	8	0	11632	logfile
✔	7XN6	33312	2024-07-19	2022-04-28	3.45	3.69	3.42	3.6	0.007	0.96	2.0	0.06	15.94	0.01	1.596	11.25	0.70	8.6	91.4	0.0	-3.19	0.79	0.79	2.08	3.6	0.003	0.59	0.0	0.04	17.29	0.00	2.179	10.15	1.95	7.2	92.8	0.0	-2.17	0.94	0.80	0.82	2.08	6874	861	6	0	2	0	0	logfile
✔	7UUQ	26800	2024-07-18	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.50	13.0	0.23	31.72	0.03	1.583	56.84	19.23	66.1	31.0	3.0	-10.80	0.67	0.73	0.90	3.63	4760	364	98	0	98	0	0	logfile
✔	7XN4	33310	2024-07-19	2022-04-28	3.35	3.60	3.25	3.5	0.005	0.79	1.0	0.05	15.38	0.01	2.223	8.84	0.70	9.8	90.2	0.0	-2.93	0.79	0.81	2.84	3.5	0.003	0.64	0.0	0.04	16.27	0.00	2.160	9.51	1.82	9.2	90.7	0.1	-2.04	1.26	0.80	0.83	2.52	6859	859	5	0	1	0	0	logfile
✔	7ZPR	14862	2024-07-23	2022-04-28	3.56	3.13	3.58	3.6	0.005	0.80	4.0	0.05	14.45	0.00	1.919	9.58	0.89	2.3	97.5	0.2	1.50	0.59	0.77	2.00	3.5	0.004	0.93	3.0	0.05	16.50	0.00	1.709	12.83	2.85	2.3	97.7	0.0	2.43	1.93	0.61	0.81	2.04	21350	2766	24	0	20	0	0	logfile
✔	7ZPP	14860	2024-07-26	2022-04-28	4.5	3.20	4.54	4.6	0.003	0.64	0.0	0.04	15.32	0.00	2.166	11.62	0.00	3.8	96.1	0.1	0.57	0.62	0.53	—	4.4	0.004	0.81	1.0	0.05	15.82	0.00	2.067	19.14	0.03	5.2	94.7	0.1	-0.45	1.73	0.67	0.66	—	33171	3903	20	80	0	0	0	logfile
✔	7XN5	33311	2024-07-19	2022-04-28	3.18	3.41	3.11	3.3	0.005	0.69	0.0	0.05	16.22	0.00	2.242	8.51	0.14	7.6	92.4	0.0	-1.89	0.83	0.84	3.17	3.3	0.004	0.58	0.0	0.04	16.59	0.00	2.083	9.89	2.21	8.3	91.7	0.0	-1.40	0.31	0.83	0.87	2.83	6955	873	5	0	2	0	0	logfile
✔	7XMZ	33308	2024-07-25	2022-04-27	3.25	3.45	3.31	3.4	0.009	1.06	5.0	0.07	13.61	0.00	1.460	5.15	0.47	4.4	95.5	0.1	-1.48	0.73	0.80	3.38	3.4	0.003	0.58	0.0	0.04	13.68	0.00	2.157	6.35	1.90	3.5	96.5	0.0	-0.46	1.04	0.74	0.81	2.88	29203	3745	12	0	32	0	0	logfile
✔	7ZPK	14856	2024-07-24	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	15.30	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.0	0.003	0.67	0.0	0.04	17.36	0.00	1.910	21.18	2.63	5.7	94.3	0.0	0.37	2.36	0.86	0.72	-0.64	25935	1513	3	55	0	0	12760	logfile
✔	7ZP9	14851	2024-07-23	2022-04-27	2.82	2.56	2.83	2.8	0.008	1.13	4.0	0.06	23.10	0.00	1.266	15.02	0.88	2.2	97.6	0.2	1.50	0.63	0.86	3.61	2.8	0.003	0.62	0.0	0.04	15.65	0.00	1.933	8.85	1.93	1.9	98.1	0.0	2.84	0.94	0.64	0.88	2.88	23097	2804	34	0	60	45	0	logfile
✔	7UTS	26788	2024-07-24	2022-04-27	3.6	2.51	3.41	2.1	0.008	0.97	0.0	0.05	13.01	0.01	2.296	0.78	0.99	4.0	96.0	0.0	-1.10	0.59	0.65	2.93	2.1	0.006	0.86	1.0	0.04	15.22	0.01	2.056	12.90	3.30	3.8	96.2	0.0	-0.60	1.21	0.61	0.67	2.50	25804	3092	10	0	203	0	0	logfile
✔	7ZPJ	14855	2024-07-23	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	15.40	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.9	0.003	0.64	0.0	0.04	17.29	0.01	1.980	12.22	2.33	4.5	95.5	0.0	0.29	1.48	0.64	0.57	0.40	23479	1355	3	55	0	0	11508	logfile
✔	7UTR	26787	2024-07-26	2022-04-27	3.7	2.66	3.48	2.9	0.008	0.92	0.0	0.05	12.99	0.01	2.067	0.73	0.66	3.7	96.3	0.0	-0.87	0.62	0.74	3.84	2.3	0.007	0.74	0.0	0.05	15.91	0.01	2.034	12.87	3.81	4.6	95.4	0.0	-0.63	0.54	0.64	0.75	3.01	32764	3976	10	0	202	0	0	logfile
✔	7UTU	26789	2024-07-26	2022-04-27	3.0	2.33	2.86	2.0	0.006	0.99	0.0	0.05	15.29	0.01	2.067	2.87	0.26	2.8	97.2	0.0	-1.20	0.65	0.77	4.45	2.0	0.005	0.77	3.0	0.05	16.32	0.01	1.923	11.32	2.68	1.9	98.1	0.0	-0.60	0.43	0.66	0.78	3.79	33004	4003	10	0	210	0	0	logfile
✔	7XMX	33307	2024-07-25	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.65	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	21.0	0.003	0.66	0.0	0.04	14.30	0.00	2.124	10.64	2.04	5.6	94.3	0.1	-0.83	1.07	0.32	0.14	0.16	28727	3700	12	0	24	0	0	logfile
✔	7UTN	26782	2024-07-19	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	23.18	0.00	2.178	8.50	0.87	1.0	99.0	0.0	0.90	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7UTV	26790	2024-07-26	2022-04-27	3.0	2.33	2.88	2.1	0.009	0.92	0.0	0.05	13.27	0.01	2.234	0.87	1.24	2.4	97.5	0.0	-0.60	0.65	0.81	5.31	2.1	0.003	0.61	0.0	0.04	16.17	0.00	2.144	8.29	2.31	1.8	98.2	0.0	-0.27	0.46	0.65	0.81	3.96	32546	3957	10	0	191	0	0	logfile
✔	7UTJ	26772	2024-07-24	2022-04-27	2.77	3.05	2.85	3.1	0.009	0.91	0.0	0.06	16.79	0.01	1.927	7.51	3.88	3.1	96.9	0.0	0.03	0.67	0.85	3.76	3.0	0.005	0.65	0.0	0.04	17.76	0.00	2.130	7.91	1.13	2.6	97.4	0.0	1.56	1.59	0.64	0.86	3.32	24591	3156	24	0	12	21	0	logfile
✔	7ZPM	14858	2024-07-22	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.66	0.0	0.04	15.08	0.00	2.140	9.14	0.89	3.1	96.9	0.0	0.81	1.06	0.93	0.91	3.13	19330	2412	6	0	0	0	0	logfile

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