Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UTP	26786	2024-07-25	2022-04-27	3.8	2.72	3.52	2.2	0.007	1.10	0.0	0.06	15.95	0.01	2.076	3.73	0.42	3.8	96.1	0.0	-1.38	0.62	0.72	2.91	3.1	0.003	0.69	0.0	0.04	16.78	0.01	2.088	12.14	4.10	3.7	96.3	0.0	-0.60	0.44	0.64	0.74	2.67	31056	3762	10	0	207	0	0	logfile
✘	7XMV	33306	2024-07-21	2022-04-27	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15228	1842	18	0	30	810	0	logfile
✔	7UTN	26782	2024-07-19	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	23.18	0.00	2.178	8.50	0.87	1.0	99.0	0.0	0.90	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7XN3	33309	2024-07-21	2022-04-27	2.9	3.05	2.92	3.0	0.006	0.62	0.0	0.05	13.52	0.00	2.174	6.06	2.37	7.9	92.1	0.0	-0.76	0.72	0.84	3.66	3.0	0.003	0.57	0.0	0.05	14.66	0.00	2.205	5.56	1.45	6.1	93.9	0.0	0.27	0.34	0.74	0.86	3.45	14016	1830	18	0	12	54	0	logfile
✔	7XMX	33307	2024-07-25	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.65	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	21.0	0.003	0.66	0.0	0.04	14.30	0.00	2.124	10.64	2.04	5.6	94.3	0.1	-0.83	1.07	0.32	0.14	0.16	28727	3700	12	0	24	0	0	logfile
✘	7XMU	33305	2024-07-21	2022-04-26	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15294	1842	18	0	36	822	0	logfile
✔	7ZoL	14847	2024-07-21	2022-04-26	3.03	3.33	3.14	3.3	0.003	0.64	0.0	0.05	17.39	0.00	2.216	6.74	0.20	6.5	92.6	0.8	-0.47	0.69	0.74	1.68	3.3	0.003	0.66	0.0	0.04	18.08	0.00	2.194	8.43	0.72	7.1	92.1	0.7	-0.87	0.40	0.69	0.78	1.98	15440	1852	4	39	4	0	0	logfile
✘	7USX	26742	2024-07-21	2022-04-26	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1670	12	0	54	0	0	logfile
✔	7UTH	26770	2024-07-27	2022-04-26	3.9	4.02	—	4.0	0.006	0.98	1.0	0.05	18.37	0.01	2.095	4.45	0.72	5.3	94.5	0.2	-0.70	0.46	0.67	0.95	4.0	0.003	0.57	1.0	0.03	18.80	0.00	1.937	12.11	4.17	5.7	94.1	0.1	0.66	1.73	0.51	0.71	0.59	36590	2242	2	0	0	0	18572	logfile
✔	7XMT	33304	2024-07-19	2022-04-26	2.8	2.93	2.65	3.0	0.002	0.47	0.0	0.04	9.40	0.00	2.267	6.46	0.00	3.0	97.0	0.0	-3.88	0.55	0.63	1.96	2.9	0.004	1.01	1.0	0.05	14.82	0.00	2.031	15.30	2.11	3.3	96.6	0.1	-0.52	1.30	0.61	0.75	2.84	8137	1068	6	0	1	0	0	logfile
✔	7XMR	33302	2024-07-19	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.38	0.00	2.112	11.80	2.73	3.6	96.4	0.0	0.22	0.64	0.59	0.74	1.47	6611	871	5	0	0	0	0	logfile
✔	7XMS	33303	2024-07-19	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.003	0.72	0.0	0.04	15.34	0.00	2.087	13.99	2.07	4.1	95.9	0.0	-0.37	0.80	0.60	0.75	2.26	8370	1113	6	0	0	0	0	logfile
✔	7UT1	26744	2024-07-26	2022-04-26	3.8	4.42	3.91	4.1	0.003	0.55	0.0	0.04	20.16	0.00	2.148	11.32	0.00	3.8	96.2	0.0	0.17	0.82	0.81	1.73	4.1	0.004	0.63	0.0	0.04	21.51	0.00	2.040	14.28	2.57	5.1	94.9	0.0	0.23	0.44	0.82	0.83	1.67	31319	3147	40	298	12	0	0	logfile
✘	7USW	26741	2024-07-21	2022-04-26	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14322	1676	12	0	68	0	0	logfile
✔	7XML	33300	2024-07-19	2022-04-26	3.2	3.67	3.32	3.6	0.009	0.93	0.0	0.06	10.11	0.01	2.350	3.25	0.00	8.1	91.6	0.2	-4.61	0.64	0.80	3.23	3.6	0.003	0.59	0.0	0.04	13.76	0.00	2.272	5.44	2.46	5.9	94.1	0.0	-1.38	1.59	0.71	0.84	2.44	7626	990	5	0	2	0	0	logfile
✔	7UT4	26754	2024-07-27	2022-04-26	3.9	4.06	—	4.0	0.006	0.93	0.0	0.04	18.88	0.01	2.087	5.16	0.53	5.0	94.9	0.0	-0.40	0.44	0.69	1.12	4.0	0.003	0.55	0.0	0.03	19.15	0.00	2.026	11.20	4.49	5.6	94.4	0.0	1.12	2.38	0.50	0.73	1.16	39740	2448	2	0	0	0	20092	logfile
✔	7ZoX	14849	2024-07-19	2022-04-26	4.4	3.95	4.37	3.8	0.005	0.72	0.0	0.04	15.62	0.00	2.219	17.13	0.14	7.7	92.3	0.0	-4.40	0.84	0.80	—	3.8	0.003	0.66	0.0	0.04	15.03	0.00	2.234	14.24	0.00	4.8	95.2	0.0	-0.57	0.72	0.84	0.78	—	6772	852	3	0	0	0	0	logfile
✘	7USY	26743	2024-07-22	2022-04-26	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16582	2025	13	0	16	0	0	logfile
✔	7ZoQ	14848	2024-07-23	2022-04-26	3.2	3.56	3.42	3.5	0.003	0.65	1.0	0.05	16.62	0.00	2.223	6.90	0.81	7.5	91.7	0.8	0.03	0.70	0.79	1.64	3.5	0.005	0.68	0.0	0.04	17.38	0.00	2.139	9.36	1.19	9.2	90.3	0.6	-0.52	1.34	0.69	0.80	1.63	20866	2514	4	39	4	0	0	logfile
✔	7XMF	33295	2024-07-21	2022-04-25	3.07	3.32	3.09	3.3	0.008	0.87	3.0	0.05	16.55	0.01	1.953	16.26	3.37	5.6	94.1	0.4	-2.41	0.55	0.73	2.36	3.3	0.003	0.64	0.0	0.04	17.49	0.00	2.109	9.83	3.29	4.8	95.1	0.1	0.60	0.57	0.61	0.81	1.95	11709	1433	7	0	11	0	0	logfile

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