Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7USM	26739	2024-07-20	2022-04-25	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11893	1521	5	0	15	0	0	logfile
✔	7XMF	33295	2024-07-21	2022-04-25	3.07	3.32	3.09	3.3	0.008	0.87	3.0	0.05	16.55	0.01	1.953	16.26	3.37	5.6	94.1	0.4	-2.41	0.55	0.73	2.36	3.3	0.003	0.64	0.0	0.04	17.49	0.00	2.109	9.83	3.29	4.8	95.1	0.1	0.60	0.57	0.61	0.81	1.95	11709	1433	7	0	11	0	0	logfile
✔	7USD	26733	2024-07-23	2022-04-25	3.0	3.11	3.03	3.0	0.004	0.70	2.0	0.05	14.52	0.00	2.207	7.15	0.15	1.8	98.2	0.0	3.36	0.80	0.81	2.15	3.0	0.002	0.55	0.0	0.04	17.11	0.00	1.981	5.78	1.20	1.6	98.4	0.0	2.89	0.61	0.87	0.88	2.02	23226	2864	7	0	2	0	0	logfile
✔	7XMG	33296	2024-07-20	2022-04-25	3.09	3.36	3.11	3.4	0.006	0.85	1.0	0.05	16.61	0.01	2.017	20.33	4.46	7.3	92.4	0.3	-2.84	0.50	0.67	1.81	3.4	0.003	0.67	0.0	0.04	17.28	0.00	2.109	12.15	3.91	5.5	94.5	0.0	-0.04	0.52	0.55	0.75	1.57	11692	1431	7	0	10	0	0	logfile
✔	7USC	26732	2024-07-23	2022-04-25	3.0	3.26	2.98	3.1	0.007	0.62	0.0	0.04	14.12	0.00	2.130	6.55	0.00	3.0	97.0	0.0	1.36	0.90	0.87	2.78	3.1	0.003	0.53	0.0	0.04	16.33	0.00	2.224	4.50	0.82	1.4	98.6	0.0	2.86	0.50	0.91	0.90	2.33	21709	2673	5	0	0	0	0	logfile
✘	7USF	26737	2024-07-22	2022-04-25	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18988	1984	22	152	10	0	0	logfile
✘	7USL	26738	2024-07-24	2022-04-25	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19065	2464	10	0	49	0	0	logfile
✔	7USE	26734	2024-07-23	2022-04-25	3.0	3.34	2.99	3.3	0.005	0.79	0.0	0.05	13.68	0.00	1.840	6.47	0.19	1.5	98.5	0.0	3.40	0.87	0.78	2.35	3.2	0.004	0.81	0.0	0.04	16.68	0.00	1.925	10.29	1.50	2.4	97.6	0.0	2.30	2.09	0.87	0.84	1.65	23913	2954	9	0	4	0	0	logfile
✔	7ZoA	14845	2024-07-19	2022-04-24	4.0	4.31	4.04	4.2	0.004	0.81	1.0	0.07	24.01	0.00	2.176	9.69	0.11	3.3	96.4	0.4	0.93	0.64	0.75	—	4.2	0.003	0.74	0.0	0.04	18.36	0.00	2.134	10.90	3.20	3.6	96.1	0.3	1.55	0.79	0.69	0.80	—	9042	1140	3	0	18	0	0	logfile
✔	7Zo8	14843	2024-07-19	2022-04-24	3.6	3.59	3.40	3.6	0.004	0.70	0.0	0.04	16.85	0.00	2.257	8.47	0.42	4.8	94.9	0.4	1.72	0.66	0.80	1.67	3.6	0.003	0.58	0.0	0.04	16.86	0.00	2.188	7.75	1.17	4.4	95.2	0.4	2.09	0.33	0.66	0.78	1.41	8952	1140	4	0	2	0	0	logfile
✔	7Zo9	14844	2024-07-19	2022-04-24	3.5	3.84	3.61	3.9	0.003	0.63	0.0	0.04	15.33	0.00	2.164	10.83	0.00	7.1	92.7	0.2	0.40	0.68	0.79	1.52	3.9	0.003	0.69	0.0	0.04	16.68	0.00	2.258	8.95	0.76	6.1	93.7	0.2	1.19	1.11	0.67	0.78	1.69	8730	1112	4	0	4	0	0	logfile
✔	7US6	26727	2024-07-23	2022-04-23	3.8	3.39	3.16	3.4	0.015	1.49	12.0	0.11	12.01	0.01	2.101	1.86	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.003	0.58	0.0	0.04	12.19	0.00	2.165	3.27	2.37	1.9	98.0	0.1	0.56	0.99	0.74	0.85	4.35	23747	3159	32	0	107	0	0	logfile
✔	7USB	26731	2024-07-18	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.32	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.59	0.0	0.05	12.35	0.00	2.340	6.42	2.08	3.0	97.0	0.0	-1.02	1.02	0.59	0.83	5.54	1661	213	3	0	5	0	0	logfile
✔	7ZNY	14842	2024-07-21	2022-04-23	3.26	3.51	3.24	3.5	0.003	0.63	0.0	0.05	12.60	0.00	2.233	8.53	0.00	4.7	95.3	0.0	-1.12	0.74	0.76	2.30	3.5	0.003	0.78	0.0	0.05	13.99	0.00	2.213	9.07	3.16	5.0	95.0	0.0	-0.77	0.32	0.75	0.78	2.35	14763	1879	4	0	0	0	0	logfile
✔	7US9	26729	2024-07-18	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.49	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.78	0.0	0.11	11.81	0.01	2.146	5.42	1.23	1.6	98.4	0.0	0.51	1.45	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile
✔	7USA	26730	2024-07-24	2022-04-23	2.8	2.94	2.77	3.0	0.015	1.60	18.0	0.13	12.19	0.01	1.968	1.95	0.04	3.5	96.2	0.3	0.09	0.75	0.85	4.68	3.0	0.003	0.61	0.0	0.05	12.96	0.00	2.271	2.93	1.96	2.3	97.6	0.1	0.61	1.76	0.75	0.91	4.18	24307	3181	33	0	90	0	0	logfile
✔	7US2	26722	2024-07-22	2022-04-22	2.76	3.74	2.77	3.1	0.009	1.13	0.0	0.05	11.27	0.00	1.974	3.11	0.56	4.8	95.1	0.1	-2.67	0.85	0.81	4.17	3.2	0.003	0.58	0.0	0.04	13.05	0.00	1.912	8.07	0.61	1.9	98.1	0.0	1.53	1.67	0.86	0.85	3.68	17200	2082	13	0	26	0	0	logfile
✘	7XLQ	33285	2024-07-23	2022-04-22	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20132	2436	8	0	33	0	0	logfile
✔	7ZNU	14814	2024-07-19	2022-04-22	4.0	4.28	4.04	4.1	0.003	0.64	0.0	0.04	15.16	0.00	2.173	9.52	0.00	3.2	96.7	0.2	1.40	0.69	0.74	—	4.1	0.003	0.83	0.0	0.04	17.22	0.00	2.202	14.08	2.16	5.4	94.4	0.2	1.14	0.95	0.71	0.78	—	8730	1112	4	0	4	0	0	logfile
✔	7XLM	33284	2024-07-19	2022-04-22	3.73	4.01	3.65	4.0	0.008	1.09	0.0	0.06	15.99	0.01	2.287	4.87	0.97	12.7	87.1	0.3	-5.14	0.64	0.83	1.81	4.0	0.002	0.69	0.0	0.04	17.49	0.00	2.274	6.29	4.46	10.1	89.9	0.0	-1.26	0.44	0.63	0.82	2.26	9268	1190	4	0	2	0	0	logfile

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