Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XLT	33286	2024-07-19	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	18.80	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.004	0.72	0.0	0.04	16.83	0.00	2.086	24.40	0.00	7.7	92.3	0.0	-2.41	1.74	0.74	0.72	—	4985	431	4	80	0	0	0	logfile
✔	7URM	26714	2024-07-18	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7US2	26722	2024-07-22	2022-04-22	2.76	3.74	2.77	3.1	0.009	1.13	0.0	0.05	11.27	0.00	1.974	3.11	0.56	4.8	95.1	0.1	-2.67	0.85	0.81	4.17	3.2	0.003	0.58	0.0	0.04	13.05	0.00	1.912	8.07	0.61	1.9	98.1	0.0	1.53	1.67	0.86	0.85	3.68	17200	2082	13	0	26	0	0	logfile
✔	7URR	26717	2024-07-27	2022-04-22	4.7	4.27	—	4.2	0.006	0.96	0.0	0.04	18.75	0.01	2.096	4.95	0.23	5.9	94.0	0.1	-1.06	0.44	0.63	—	4.2	0.002	0.54	0.0	0.03	14.83	0.00	1.938	11.11	0.00	5.6	94.3	0.1	0.27	0.78	0.52	0.70	—	38168	2345	2	0	0	0	19331	logfile
✘	7XLQ	33285	2024-07-23	2022-04-22	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20132	2436	8	0	33	0	0	logfile
✔	7UR4	26704	2024-07-27	2022-04-21	3.34	4.06	3.35	3.8	0.006	0.63	0.0	0.05	14.50	0.01	2.034	1.55	0.42	3.8	96.2	0.0	-0.89	0.86	0.85	3.07	3.8	0.004	0.56	0.0	0.04	13.44	0.00	1.984	6.12	1.02	3.4	96.6	0.0	0.08	1.43	0.84	0.83	2.66	30066	1974	15	0	15	0	14784	logfile
✔	7XL4	33272	2024-07-24	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	3.8	0.004	0.79	1.0	0.04	14.16	0.00	1.925	9.24	3.60	5.5	94.5	0.0	-1.25	1.32	0.81	0.80	1.30	24560	3479	8	0	3	0	0	logfile
✔	7URG	26712	2024-07-19	2022-04-21	3.46	3.69	3.49	3.7	0.002	0.50	0.0	0.04	15.44	0.00	2.229	4.69	0.00	3.5	96.5	0.0	0.73	0.69	0.75	2.59	3.7	0.003	0.56	0.0	0.04	16.55	0.00	2.211	4.69	4.23	4.8	95.2	0.0	0.46	0.51	0.74	0.79	2.12	6260	802	4	0	2	0	0	logfile
✘	7ZNQ	14813	2024-07-21	2022-04-21	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12862	1670	8	0	3	0	0	logfile
✔	7URD	26709	2024-07-19	2022-04-21	2.92	3.41	2.97	3.3	0.017	0.95	0.0	0.83	26.25	0.00	2.177	10.24	0.00	5.0	95.0	0.0	-2.44	0.59	0.86	3.86	3.3	0.003	1.11	0.0	0.12	19.87	0.00	2.253	5.94	1.56	4.2	95.8	0.0	1.03	0.96	0.55	0.85	3.31	5534	678	5	0	6	0	0	logfile
✔	7ZNJ	14803	2024-07-26	2022-04-21	2.4	2.51	2.47	2.5	0.004	0.82	0.0	0.05	17.78	0.01	2.092	3.02	0.83	1.1	98.9	0.0	-1.45	0.70	0.77	3.99	2.5	0.004	0.67	0.0	0.05	17.87	0.00	2.146	5.29	2.67	2.0	98.0	0.0	1.07	1.45	0.71	0.80	3.86	35088	4242	36	36	12	0	0	logfile
✔	7URC	26708	2024-07-19	2022-04-21	3.14	3.74	3.25	3.6	0.018	1.00	0.0	0.88	25.61	0.00	2.248	10.09	0.00	3.5	96.5	0.0	-3.02	0.58	0.86	3.34	3.6	0.004	1.11	0.0	0.12	18.37	0.00	2.286	7.12	0.54	3.7	96.3	0.0	0.89	1.27	0.56	0.86	2.98	5561	658	4	0	12	0	0	logfile
✔	7XL3	33271	2024-07-24	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.77	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	3.2	0.003	0.59	0.0	0.04	15.30	0.00	2.223	7.27	3.33	4.2	95.8	0.0	-0.92	1.23	0.76	0.80	2.24	25700	3480	8	0	3	0	0	logfile
✔	7UR6	26706	2024-07-23	2022-04-21	3.46	3.95	3.52	3.8	0.005	0.81	0.0	0.06	18.66	0.00	2.075	3.15	0.23	2.9	97.1	0.0	-0.21	0.81	0.84	2.48	3.8	0.005	0.73	0.0	0.05	15.23	0.00	2.150	8.75	2.04	4.9	95.1	0.0	-0.22	0.57	0.80	0.85	2.59	21633	2466	60	0	180	0	0	logfile
✔	7XL6	33273	2024-07-23	2022-04-21	3.25	3.46	3.22	3.5	0.002	0.58	0.0	0.04	17.81	0.00	2.111	7.85	0.13	6.9	93.1	0.0	-1.13	0.66	0.78	1.56	3.5	0.003	0.59	0.0	0.04	18.17	0.00	2.187	7.47	2.97	6.8	93.2	0.0	-0.82	0.80	0.67	0.83	2.16	20783	2576	7	0	0	0	0	logfile
✔	7XLB	33276	2024-07-22	2022-04-21	3.44	3.67	3.47	3.7	0.003	0.64	0.0	0.04	19.23	0.01	2.236	8.13	0.19	7.7	92.3	0.0	-3.68	0.63	0.71	0.83	3.7	0.003	0.67	0.0	0.04	19.76	0.01	2.222	7.15	6.02	8.3	91.7	0.0	-3.13	0.27	0.64	0.72	0.35	19138	2352	7	0	0	0	0	logfile
✔	7ZNN	14812	2024-07-21	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.003	0.70	0.0	0.04	13.34	0.00	2.120	24.37	0.00	5.1	94.9	0.1	-1.32	2.02	0.88	0.71	—	14606	1814	4	0	1	0	0	logfile
✔	7XL8	33274	2024-07-22	2022-04-21	3.0	3.22	3.00	3.2	0.010	1.31	12.0	0.07	19.59	0.01	2.249	9.41	1.35	1.3	98.7	0.0	-1.48	0.57	0.79	2.25	3.2	0.002	0.56	0.0	0.04	17.19	0.00	2.359	4.03	1.86	2.3	97.7	0.0	2.87	0.99	0.59	0.81	2.04	16920	1956	24	0	84	0	0	logfile
✔	7UQX	26701	2024-07-20	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	11.93	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.002	0.61	0.0	0.04	14.18	0.00	2.172	12.89	3.39	4.1	95.9	0.0	0.18	0.96	0.75	0.75	3.02	9491	1154	7	2	5	0	0	logfile
✔	7XKT	33270	2024-07-27	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	20.88	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.58	0.0	0.04	16.18	0.00	2.156	3.16	0.56	2.3	97.7	0.0	4.27	1.06	0.57	0.81	4.14	34488	1992	36	0	108	444	16008	logfile

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