Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XKP	33259	2024-07-24	2022-04-20	3.0	3.46	3.07	3.2	0.002	0.48	0.0	0.04	13.19	0.00	2.089	3.88	0.00	2.4	97.6	0.0	1.63	0.84	0.90	3.37	3.2	0.004	0.54	0.0	0.04	14.89	0.00	1.966	4.82	1.09	2.9	97.1	0.0	1.45	0.29	0.84	0.91	3.04	24105	3128	8	0	2	0	0	logfile
✔	7XKT	33270	2024-07-27	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	20.88	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.58	0.0	0.04	16.18	0.00	2.156	3.16	0.56	2.3	97.7	0.0	4.27	1.06	0.57	0.81	4.14	34488	1992	36	0	108	444	16008	logfile
✔	7XKR	33265	2024-07-24	2022-04-20	2.6	3.37	2.59	3.0	0.003	0.54	0.0	0.04	12.97	0.00	2.006	3.17	0.00	1.6	98.4	0.0	1.93	0.86	0.90	3.82	2.9	0.003	0.53	0.0	0.04	14.32	0.00	1.961	3.55	0.82	2.1	97.9	0.0	1.56	0.82	0.87	0.93	3.76	25246	3257	14	0	11	0	0	logfile
✔	7UQX	26701	2024-07-20	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	11.93	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.002	0.61	0.0	0.04	14.18	0.00	2.172	12.89	3.39	4.1	95.9	0.0	0.18	0.96	0.75	0.75	3.02	9491	1154	7	2	5	0	0	logfile
✔	7XKo	33258	2024-07-23	2022-04-20	3.4	3.66	3.35	3.3	0.003	0.48	0.0	0.04	13.41	0.00	2.161	5.74	0.00	2.9	97.1	0.0	1.38	0.84	0.89	2.61	3.4	0.002	0.50	0.0	0.04	15.02	0.00	2.159	7.10	1.33	3.0	97.0	0.0	1.20	0.91	0.84	0.90	2.32	24075	3127	8	0	1	0	0	logfile
✔	7ZN5	14801	2024-07-19	2022-04-20	3.7	4.05	—	3.9	0.005	0.62	0.0	0.04	18.87	0.01	2.205	7.33	0.13	6.5	93.5	0.0	0.18	0.74	0.76	0.98	3.9	0.003	0.56	0.0	0.04	20.93	0.00	2.173	9.25	1.96	4.9	95.1	0.0	0.50	0.52	0.74	0.76	0.67	9046	865	4	95	0	0	0	logfile
✔	7ZN4	14800	2024-07-22	2022-04-20	4.32	3.99	4.24	3.7	0.003	0.49	0.0	0.05	12.38	0.00	2.063	6.92	0.00	3.6	96.4	0.0	-0.60	0.85	0.78	—	3.7	0.005	0.68	0.0	0.05	12.58	0.00	2.068	16.03	0.05	4.8	95.2	0.0	-0.96	1.98	0.86	0.82	—	19989	2581	6	0	0	0	0	logfile
✔	7ZN7	14802	2024-07-20	2022-04-20	3.78	4.02	3.79	4.0	0.006	1.05	0.0	0.06	13.00	0.01	2.209	11.08	1.39	5.6	94.3	0.1	-2.48	0.75	0.76	1.50	4.0	0.004	0.72	0.0	0.04	15.77	0.00	2.152	13.93	3.03	4.6	95.4	0.0	-0.71	1.90	0.76	0.76	1.78	10497	1311	4	0	1	0	0	logfile
✘	7XKF	33250	2024-07-20	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.09	0.01	2.055	14.66	1.06	4.4	95.6	0.0	0.77	0.72	0.82	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7961	1008	6	0	1	0	0	logfile
✔	7XK2	33241	2024-07-19	2022-04-19	3.1	3.31	3.13	3.3	0.005	1.02	0.0	0.06	16.48	0.01	2.251	6.29	0.32	6.7	93.3	0.0	-2.41	0.64	0.76	2.08	3.3	0.004	0.96	1.0	0.04	16.92	0.00	2.179	13.38	4.39	6.7	93.3	0.0	-0.82	0.35	0.67	0.81	2.11	8791	1128	6	0	1	0	0	logfile
✘	7XK4	33243	2024-07-21	2022-04-19	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14834	1894	11	0	11	0	0	logfile
✔	7XK0	33239	2024-07-20	2022-04-19	3.59	3.85	3.58	3.7	0.011	0.96	0.0	0.06	19.03	0.01	2.206	10.11	5.36	10.4	89.6	0.0	-5.27	0.81	0.86	2.36	3.7	0.002	0.58	0.0	0.04	18.40	0.00	2.150	5.45	1.46	5.2	94.8	0.0	-1.13	0.54	0.80	0.84	1.62	9208	983	2	70	1	0	0	logfile
✔	7UQi	26695	2024-07-26	2022-04-19	3.8	2.46	—	1.9	0.004	0.78	0.0	0.04	17.30	0.01	2.210	13.27	0.86	6.2	93.8	0.0	-1.17	0.74	0.72	1.54	2.0	0.003	0.68	0.0	0.04	17.94	0.00	1.975	12.33	3.23	6.2	93.8	0.0	-0.25	0.38	0.73	0.71	1.19	32424	4025	14	0	5	0	0	logfile
✔	7XJZ	33238	2024-07-20	2022-04-19	3.9	4.23	3.91	4.0	0.004	0.59	0.0	0.04	16.50	0.00	2.218	6.48	3.13	4.2	95.8	0.0	-1.22	0.83	0.84	1.97	4.0	0.003	1.15	2.0	0.04	16.93	0.00	2.008	6.42	1.81	4.0	96.0	0.0	-0.42	0.47	0.83	0.84	1.89	9276	983	2	72	1	0	0	logfile
✘	7XK6	33245	2024-07-21	2022-04-19	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15123	1919	16	0	12	49	0	logfile
✔	7XKE	33249	2024-07-20	2022-04-19	2.9	3.36	2.83	3.2	0.006	0.56	0.0	0.04	12.85	0.00	2.213	9.98	0.24	4.2	95.8	0.0	0.17	0.70	0.83	3.16	3.2	0.003	0.62	0.0	0.04	15.35	0.00	2.142	11.00	1.67	3.7	96.3	0.0	0.51	0.48	0.71	0.85	3.21	7922	1009	6	0	1	1	0	logfile
✔	7ZMA	14793	2024-07-22	2022-04-19	2.9	3.20	3.03	3.2	0.003	0.89	11.0	0.17	12.20	0.00	2.013	4.62	0.00	5.5	94.5	0.0	-0.24	0.64	0.73	3.49	3.2	0.004	0.93	12.0	0.18	15.28	0.01	1.878	7.55	1.61	7.9	92.1	0.0	-0.22	0.61	0.67	0.78	3.72	18816	1214	2	0	0	0	9332	logfile
✔	7XJY	33237	2024-07-20	2022-04-19	3.6	3.59	3.48	3.7	0.007	0.94	3.0	0.06	14.44	0.01	2.197	9.77	7.59	4.2	95.5	0.3	-0.02	0.64	0.71	1.97	3.6	0.004	0.86	1.0	0.04	16.14	0.00	2.169	8.90	2.28	2.9	97.0	0.1	1.24	1.35	0.66	0.74	2.03	12070	1526	2	0	0	0	0	logfile
✔	7UQK	26697	2024-07-25	2022-04-19	3.1	2.64	3.08	3.1	0.005	0.94	1.0	0.05	16.27	0.01	2.262	5.84	0.37	7.6	92.3	0.1	-4.31	0.61	0.76	2.39	3.0	0.003	0.65	0.0	0.04	17.45	0.00	2.101	9.73	2.42	6.4	93.6	0.0	-0.30	1.77	0.65	0.82	1.97	29142	3631	12	0	5	0	0	logfile
✔	7XKi	33254	2024-07-26	2022-04-19	3.4	3.86	3.39	3.8	0.002	0.41	0.0	0.04	13.46	0.00	2.299	1.34	0.00	2.5	97.5	0.0	5.17	0.60	0.76	2.60	3.8	0.003	0.51	0.0	0.04	14.73	0.00	2.141	4.12	0.72	3.9	96.1	0.0	4.40	1.09	0.54	0.76	2.55	32280	1992	24	0	48	0	15996	logfile

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