Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UPT	26675	2024-07-21	2022-04-16	3.5	4.20	3.67	4.0	0.004	0.95	0.0	0.13	19.59	0.00	1.944	10.54	11.28	7.3	92.6	0.1	-3.04	0.80	0.78	1.19	4.0	0.005	1.15	2.0	0.06	18.83	0.01	1.898	13.80	6.18	8.5	91.5	0.0	-0.26	1.37	0.81	0.80	1.20	13567	1692	13	0	21	0	0	logfile
✔	7UPN	26673	2024-07-19	2022-04-16	3.5	4.29	3.52	4.0	0.002	0.53	0.0	0.04	14.66	0.00	2.284	6.79	0.00	7.4	92.3	0.4	-1.27	0.86	0.78	1.41	4.0	0.004	0.69	0.0	0.04	16.64	0.01	2.215	11.18	1.27	8.7	90.6	0.7	-1.93	1.27	0.87	0.82	1.77	8872	1100	10	0	2	0	0	logfile
✔	7UPR	26674	2024-07-21	2022-04-16	3.2	3.90	3.36	3.8	0.004	0.80	0.0	0.04	15.82	0.00	2.062	7.72	4.18	7.1	92.9	0.0	-3.02	0.74	0.78	1.45	3.8	0.003	0.66	0.0	0.04	17.44	0.00	1.868	9.87	4.41	8.4	91.6	0.0	0.15	1.30	0.75	0.81	1.21	12780	1678	12	0	19	0	0	logfile
✔	7XJA	33223	2024-07-19	2022-04-15	3.5	3.35	3.43	3.4	0.003	0.60	0.0	0.04	13.73	0.00	2.182	9.41	0.00	1.5	98.5	0.0	1.81	0.57	0.72	3.01	3.4	0.003	0.61	0.0	0.04	16.03	0.00	2.241	9.41	2.87	3.1	96.9	0.0	2.48	1.79	0.64	0.81	3.27	7276	944	2	0	0	0	0	logfile
✔	7ZLG	14779	2024-07-20	2022-04-15	2.72	2.42	2.69	2.6	0.004	0.71	0.0	0.05	13.43	0.00	2.187	7.18	0.66	4.4	95.2	0.4	0.03	0.69	0.83	2.76	2.4	0.006	0.72	0.0	0.05	15.23	0.01	2.014	8.60	1.04	6.1	93.7	0.2	0.05	0.75	0.67	0.84	2.96	9618	1226	7	0	0	10	0	logfile
✔	7ZLK	14783	2024-07-23	2022-04-15	3.99	4.35	4.04	4.2	0.021	1.85	0.0	0.13	14.46	0.01	2.348	0.97	0.08	2.9	97.1	0.0	0.34	0.76	0.76	1.82	4.2	0.004	0.77	0.0	0.05	14.89	0.00	2.134	13.91	3.13	6.0	94.0	0.1	-0.36	1.52	0.78	0.81	1.42	23518	2836	35	0	98	0	0	logfile
✔	7ZLi	14781	2024-07-20	2022-04-15	2.99	3.26	3.03	3.3	0.007	1.01	2.0	0.05	13.51	0.00	1.834	27.48	0.96	6.5	93.0	0.4	0.03	0.65	0.83	2.90	3.3	0.004	0.65	0.0	0.04	15.43	0.00	1.998	8.07	2.10	5.8	94.1	0.1	0.63	0.76	0.63	0.84	2.44	9582	1218	5	0	1	13	0	logfile
✔	7ZLJ	14782	2024-07-20	2022-04-15	3.63	3.90	3.68	3.8	0.006	0.81	0.0	0.04	13.73	0.01	2.033	32.13	0.00	4.8	95.1	0.1	0.10	0.69	0.80	1.94	3.8	0.003	0.63	0.0	0.04	15.20	0.00	2.191	8.75	1.14	5.5	94.4	0.1	0.74	1.53	0.67	0.78	1.47	9659	1226	7	0	1	10	0	logfile
✔	7UPL	26669	2024-07-26	2022-04-15	4.1	4.41	4.14	4.2	0.004	0.68	0.0	0.05	14.03	0.00	2.086	7.13	0.00	6.4	93.6	0.0	-1.29	0.78	0.72	—	4.2	0.003	0.62	0.0	0.05	13.48	0.00	2.070	7.03	0.03	4.8	95.2	0.0	-1.05	0.56	0.81	0.81	—	32145	4031	23	0	54	0	0	logfile
✔	7ZLH	14780	2024-07-20	2022-04-15	2.75	2.55	2.72	2.6	0.005	0.81	3.0	0.06	13.85	0.01	2.169	9.51	0.48	5.4	94.2	0.4	-0.68	0.60	0.79	2.49	2.6	0.004	0.62	0.0	0.04	15.95	0.00	2.127	8.87	1.63	5.4	94.5	0.1	0.01	0.40	0.59	0.81	2.30	9481	1211	5	0	0	4	0	logfile
✔	7XJ6	33220	2024-07-26	2022-04-15	3.29	3.86	3.38	3.6	0.004	0.61	0.0	0.05	14.24	0.00	2.176	7.24	0.11	3.6	96.4	0.0	-0.01	0.81	0.83	2.18	3.6	0.005	0.62	0.0	0.05	14.80	0.00	2.142	9.35	2.12	5.2	94.8	0.0	-0.26	1.22	0.81	0.86	2.34	31949	4020	28	0	43	0	0	logfile
✔	7ZLV	14790	2024-07-20	2022-04-15	4.22	3.64	4.54	3.6	0.003	0.60	0.0	0.05	13.60	0.01	1.813	25.16	0.00	10.5	89.3	0.2	-3.64	0.70	0.68	—	3.6	0.003	0.70	0.0	0.05	13.80	0.00	2.139	20.89	0.00	9.3	90.5	0.2	-3.20	0.50	0.71	0.69	—	12234	1581	3	0	0	0	0	logfile
✔	7XJ8	33221	2024-07-25	2022-04-15	3.3	3.74	3.27	3.6	0.004	0.59	0.0	0.05	13.54	0.00	2.119	6.80	0.00	3.1	96.9	0.0	0.03	0.82	0.87	2.94	3.6	0.003	0.54	0.0	0.04	14.55	0.00	2.152	7.33	1.47	3.5	96.5	0.0	0.22	0.35	0.82	0.89	2.58	28706	3597	27	0	45	0	0	logfile
✔	7XJ9	33222	2024-07-19	2022-04-15	3.27	3.75	3.48	3.6	0.003	0.57	0.0	0.04	12.83	0.00	2.122	7.72	0.00	5.4	94.6	0.0	-1.12	0.68	0.80	2.93	3.6	0.003	0.59	0.0	0.04	14.97	0.00	2.091	7.97	2.95	5.3	94.7	0.0	-1.00	0.40	0.66	0.82	2.52	8375	1074	8	0	0	0	0	logfile
✘	7UPi	26667	2024-07-19	2022-04-15	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7775	972	5	0	5	0	0	logfile
✔	7UPK	26668	2024-07-21	2022-04-15	2.8	3.03	2.80	3.0	0.003	0.57	0.0	0.04	12.65	0.00	2.156	5.84	0.06	1.7	98.3	0.0	-0.01	0.70	0.81	5.07	3.1	0.003	0.55	0.0	0.04	15.74	0.00	2.159	7.49	3.00	1.7	98.3	0.0	0.42	0.90	0.69	0.87	4.95	15276	1983	9	0	0	0	0	logfile
✔	7UPA	26659	2024-07-21	2022-04-14	2.5	2.96	2.48	2.8	0.003	0.65	0.0	0.05	14.86	0.00	2.227	1.94	0.96	3.8	96.2	0.0	0.34	0.83	0.85	3.76	2.8	0.005	0.69	0.0	0.05	15.47	0.00	2.120	2.93	2.99	4.2	95.8	0.0	0.32	0.24	0.84	0.88	3.60	15745	2016	12	0	12	0	0	logfile
✔	7UP9	26658	2024-07-20	2022-04-14	2.9	3.12	2.84	3.1	0.003	0.61	0.0	0.05	12.63	0.00	2.192	2.37	0.51	2.7	97.3	0.0	0.12	0.80	0.85	4.34	3.1	0.002	0.50	0.0	0.04	14.78	0.00	2.188	2.50	1.30	2.9	97.1	0.0	0.82	0.75	0.82	0.91	3.36	12168	1556	9	0	14	0	0	logfile
✔	7UPB	26660	2024-07-21	2022-04-14	3.0	3.26	3.02	3.3	0.003	0.56	0.0	0.05	14.22	0.00	2.221	4.23	0.68	1.9	98.1	0.0	0.44	0.71	0.84	4.00	3.3	0.003	0.53	0.0	0.04	15.10	0.00	2.170	6.16	1.99	2.1	97.9	0.0	0.72	0.27	0.71	0.85	4.08	15654	2025	12	0	3	0	0	logfile
✔	7XiY	33212	2024-07-24	2022-04-14	3.07	3.34	3.26	3.4	0.006	0.86	0.0	0.05	19.04	0.01	2.266	5.79	0.18	7.6	92.0	0.3	-2.36	0.69	0.73	1.63	3.3	0.005	0.73	0.0	0.05	16.98	0.01	2.105	10.20	4.20	9.7	90.1	0.2	-1.65	1.63	0.74	0.83	2.18	26089	3255	18	0	47	0	0	logfile

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