Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UPA	26659	2024-07-21	2022-04-14	2.5	2.96	2.48	2.8	0.003	0.65	0.0	0.05	14.86	0.00	2.227	1.94	0.96	3.8	96.2	0.0	0.34	0.83	0.85	3.76	2.8	0.005	0.69	0.0	0.05	15.47	0.00	2.120	2.93	2.99	4.2	95.8	0.0	0.32	0.24	0.84	0.88	3.60	15745	2016	12	0	12	0	0	logfile
✔	7UoV	26655	2024-07-24	2022-04-14	2.75	3.42	2.84	3.2	0.005	0.82	0.0	0.05	20.50	0.00	2.171	6.87	0.00	4.7	95.3	0.0	0.15	0.85	0.85	3.77	3.2	0.003	0.72	0.0	0.04	15.06	0.00	2.170	8.09	2.26	5.0	95.0	0.0	0.24	0.79	0.80	0.83	3.94	19757	2304	51	0	127	0	0	logfile
✔	7UPD	26662	2024-07-21	2022-04-14	2.4	2.56	2.38	2.5	0.003	0.57	0.0	0.05	15.74	0.00	2.222	1.74	1.18	1.7	98.3	0.0	0.86	0.78	0.89	5.05	2.5	0.002	0.53	0.0	0.05	16.16	0.00	2.144	2.16	2.93	1.9	98.1	0.0	0.99	0.22	0.78	0.89	4.90	15801	2016	12	0	12	0	0	logfile
✔	7UP9	26658	2024-07-20	2022-04-14	2.9	3.12	2.84	3.1	0.003	0.61	0.0	0.05	12.63	0.00	2.192	2.37	0.51	2.7	97.3	0.0	0.12	0.80	0.85	4.34	3.1	0.002	0.50	0.0	0.04	14.78	0.00	2.188	2.50	1.30	2.9	97.1	0.0	0.82	0.75	0.82	0.91	3.36	12168	1556	9	0	14	0	0	logfile
✔	7ZLA	14778	2024-07-19	2022-04-14	3.99	4.22	3.89	4.1	0.007	0.86	0.0	0.05	21.72	0.01	2.198	18.63	0.00	6.9	93.1	0.0	-1.94	0.71	0.67	0.80	4.1	0.003	0.64	0.0	0.04	22.57	0.00	2.169	11.91	3.30	5.3	94.6	0.1	-0.94	1.01	0.70	0.66	1.04	8624	822	4	92	0	0	0	logfile
✔	7XiX	33211	2024-07-24	2022-04-14	3.25	3.46	3.27	3.4	0.004	0.61	0.0	0.05	15.68	0.00	2.195	5.94	0.00	5.4	94.6	0.0	-1.30	0.76	0.81	2.84	3.5	0.003	0.55	0.0	0.05	14.85	0.00	2.097	5.52	1.89	5.3	94.7	0.0	-1.09	1.11	0.80	0.86	2.43	26586	3285	24	0	66	0	0	logfile
✔	7XiW	33210	2024-07-24	2022-04-14	3.62	4.05	3.90	3.9	0.003	0.59	0.0	0.05	13.91	0.00	1.353	7.44	0.03	6.3	93.3	0.4	-1.29	0.74	0.73	1.53	3.9	0.003	0.62	0.0	0.04	15.17	0.00	2.142	7.63	1.78	6.3	93.2	0.4	-0.98	0.81	0.75	0.79	1.55	26624	3310	19	0	56	0	0	logfile
✔	7XJ0	33214	2024-07-22	2022-04-14	2.53	2.75	2.61	2.8	0.020	1.36	17.0	0.08	18.35	0.01	2.206	19.02	6.56	7.0	93.0	0.0	-3.52	0.59	0.76	3.16	2.8	0.003	0.58	0.0	0.04	17.22	0.00	2.169	10.51	2.13	5.4	94.6	0.0	0.62	0.43	0.60	0.78	2.73	18791	2428	8	0	24	0	0	logfile
✔	7XJ1	33216	2024-07-22	2022-04-14	2.93	3.14	2.97	3.1	0.015	0.96	1.0	0.04	17.49	0.00	2.200	12.55	4.02	6.8	93.2	0.0	-3.39	0.66	0.81	2.69	3.2	0.003	0.59	0.0	0.04	17.28	0.00	2.226	9.85	3.29	5.3	94.7	0.0	0.11	1.12	0.67	0.83	2.88	18910	2444	8	0	20	0	0	logfile
✔	7XiZ	33213	2024-07-18	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	19.02	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.83	0.0	0.05	18.98	0.01	2.234	13.17	5.96	15.8	83.4	0.8	-3.73	1.54	0.37	0.73	1.80	2161	267	2	0	2	0	0	logfile
✔	7XJ3	33218	2024-07-22	2022-04-14	3.54	3.75	3.55	3.7	0.019	1.03	0.0	0.04	16.43	0.01	2.242	12.56	6.79	8.8	91.2	0.0	-3.52	0.69	0.84	1.76	3.8	0.002	0.55	0.0	0.04	16.27	0.00	2.254	6.31	2.99	4.0	96.0	0.0	0.90	1.18	0.63	0.79	1.48	18493	2428	8	0	14	0	0	logfile
✔	7UoL	26649	2024-07-28	2022-04-13	3.5	3.64	3.59	3.6	0.003	0.58	0.0	0.04	14.15	0.00	2.380	3.05	0.50	2.1	97.9	0.0	0.54	0.82	0.88	2.27	3.6	0.003	0.53	0.0	0.04	15.37	0.00	2.251	4.34	2.35	1.5	98.5	0.0	1.25	0.39	0.81	0.86	3.19	44496	5664	24	0	0	0	0	logfile
✔	7ZKQ	14765	2024-07-21	2022-04-13	3.15	3.50	3.23	3.5	0.005	0.65	0.0	0.04	17.82	0.00	2.128	9.32	0.23	3.0	97.0	0.1	1.28	0.62	0.75	2.71	3.5	0.002	0.53	0.0	0.04	16.42	0.00	2.103	7.19	1.58	2.6	97.3	0.1	1.88	1.30	0.57	0.75	2.33	12352	1498	8	0	4	0	0	logfile
✔	7ZL4	14777	2024-07-19	2022-04-13	3.45	3.63	3.43	3.5	0.007	1.39	0.0	0.09	16.42	0.00	2.498	3.15	0.00	1.8	98.2	0.0	-4.06	0.67	0.70	0.89	3.5	0.003	0.60	0.0	0.05	15.92	0.00	2.093	12.73	2.73	3.7	96.3	0.0	-2.22	0.99	0.71	0.75	1.61	6678	465	4	0	0	0	3291	logfile
✔	7UoT	26653	2024-07-23	2022-04-13	2.77	3.42	2.87	3.2	0.006	0.86	0.0	0.06	20.95	0.01	2.199	5.42	0.00	4.9	95.1	0.0	0.38	0.85	0.87	4.33	3.2	0.004	0.72	0.0	0.05	15.23	0.00	2.157	6.42	1.89	5.7	94.3	0.0	0.49	0.38	0.83	0.89	3.86	16834	1956	47	0	116	0	0	logfile
✘	7UoP	26652	2024-07-21	2022-04-13	2.8	3.24	2.81	3.1	0.004	0.59	0.0	0.05	12.28	0.00	2.126	2.36	1.02	2.4	97.6	0.0	0.45	0.81	0.83	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15702	2010	12	0	12	0	0	logfile
✔	7UoJ	26648	2024-07-24	2022-04-13	4.02	4.32	4.06	4.3	0.006	0.86	0.0	0.06	19.28	0.01	2.198	13.69	0.11	8.9	90.7	0.3	-1.79	0.67	0.71	—	4.3	0.004	0.72	0.0	0.05	14.71	0.00	2.047	12.23	0.00	8.2	91.7	0.2	-1.55	1.43	0.65	0.66	—	26133	3144	54	0	120	0	0	logfile
✔	7ZKP	14764	2024-07-23	2022-04-13	3.2	3.49	3.33	3.5	0.004	0.73	1.0	0.04	15.30	0.00	2.119	11.26	0.09	4.3	95.5	0.2	0.98	0.63	0.71	1.48	3.5	0.005	0.65	0.0	0.04	16.69	0.00	2.128	9.55	2.06	4.9	94.9	0.2	1.74	0.91	0.69	0.84	1.64	19929	2451	19	0	6	0	0	logfile
✔	7ZL1	14774	2024-07-24	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.81	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	2.4	0.004	0.66	0.0	0.05	15.76	0.00	2.084	4.88	2.44	6.3	93.6	0.1	-0.24	0.52	0.72	0.86	5.23	27257	1720	24	0	8	379	13574	logfile
✘	7ZKi	14763	2024-07-19	2022-04-13	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7120	688	5	77	2	0	0	logfile

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