Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UoJ	26648	2024-07-24	2022-04-13	4.02	4.32	4.06	4.3	0.006	0.86	0.0	0.06	19.28	0.01	2.198	13.69	0.11	8.9	90.7	0.3	-1.79	0.67	0.71	—	4.3	0.004	0.72	0.0	0.05	14.71	0.00	2.047	12.23	0.00	8.2	91.7	0.2	-1.55	1.43	0.65	0.66	—	26133	3144	54	0	120	0	0	logfile
✘	7ZK3	14753	2024-07-20	2022-04-12	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11898	1442	4	0	8	0	0	logfile
✘	7Uo1	26637	2024-07-22	2022-04-12	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16588	112	4	455	10	0	5894	logfile
✔	7ZKA	14760	2024-07-20	2022-04-12	2.9	3.15	2.94	3.2	0.009	0.87	2.0	0.06	19.02	0.01	2.034	9.33	0.00	2.5	97.5	0.0	1.13	0.67	0.75	2.46	3.2	0.005	0.59	0.0	0.04	16.79	0.00	1.913	6.64	1.35	3.0	97.0	0.0	1.82	0.74	0.58	0.83	2.81	9406	1177	2	0	9	4	0	logfile
✔	7ZK4	14754	2024-07-20	2022-04-12	2.6	2.81	2.63	2.9	0.006	0.86	6.0	0.05	15.32	0.00	2.008	9.40	0.10	2.3	97.7	0.0	1.26	0.69	0.84	3.61	2.9	0.003	0.55	0.0	0.04	16.58	0.00	1.937	7.22	1.89	2.5	97.4	0.1	1.74	0.47	0.57	0.82	3.18	9337	1176	2	0	9	4	0	logfile
✘	7ZKE	14762	2024-07-25	2022-04-12	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29303	1801	5	20	3	0	14679	logfile
✔	7ZK6	14756	2024-07-20	2022-04-12	3.1	3.35	3.12	3.4	0.009	0.90	1.0	0.05	14.77	0.00	2.043	9.90	0.10	1.6	98.4	0.0	0.33	0.64	0.80	2.34	3.4	0.002	0.55	0.0	0.04	16.59	0.00	1.944	8.08	2.59	1.9	98.1	0.0	1.47	1.01	0.63	0.82	1.99	9310	1178	2	0	6	4	0	logfile
✔	7ZK9	14759	2024-07-19	2022-04-12	4.3	4.49	4.46	4.4	0.009	1.00	0.0	0.06	13.59	0.00	2.255	15.76	0.74	5.3	94.6	0.1	-0.05	0.62	0.77	—	4.3	0.003	0.64	0.0	0.04	13.65	0.00	2.172	15.54	0.00	4.9	95.1	0.0	0.38	1.02	0.62	0.78	—	8999	1157	2	0	1	0	0	logfile
✔	7ZKB	14761	2024-07-19	2022-04-12	4.7	4.80	4.47	4.7	0.008	1.05	2.0	0.06	15.45	0.00	2.224	16.22	0.21	6.9	93.1	0.0	0.07	0.56	0.74	—	4.7	0.003	0.67	0.0	0.04	14.69	0.00	2.100	14.51	0.00	7.1	92.9	0.0	0.06	0.53	0.56	0.75	—	9043	1158	2	0	1	0	0	logfile
✔	7XiC	33202	2024-07-25	2022-04-12	3.3	3.72	3.48	3.6	0.009	1.14	0.0	0.08	10.86	0.01	1.933	11.05	1.40	5.6	92.5	1.8	-2.01	0.67	0.65	1.91	3.6	0.004	0.68	0.0	0.05	13.23	0.00	2.066	7.49	2.15	5.6	94.2	0.1	-0.58	1.44	0.73	0.79	1.97	29941	3706	31	0	71	0	0	logfile
✘	7Uo5	26640	2024-07-21	2022-04-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13979	112	3	373	7	0	5024	logfile
✘	7XiD	33203	2024-07-26	2022-04-12	3.3	3.75	3.57	3.6	0.008	1.04	2.0	0.08	12.61	0.01	1.822	9.42	1.12	6.0	92.4	1.6	-2.95	0.65	0.62	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34256	4153	33	0	91	0	0	logfile
✔	7ZK8	14758	2024-07-20	2022-04-12	3.0	3.30	3.13	3.3	0.009	0.97	2.0	0.06	14.59	0.00	1.946	9.21	0.10	3.6	96.4	0.0	0.60	0.66	0.83	2.85	3.3	0.003	0.58	0.0	0.04	16.46	0.00	1.944	8.94	1.86	2.6	97.4	0.0	1.54	0.99	0.59	0.83	2.42	9331	1181	2	0	7	4	0	logfile
✔	7Uo7	26641	2024-07-21	2022-04-12	3.09	3.90	3.15	3.5	0.005	0.64	0.0	0.04	15.46	0.00	2.012	8.57	0.76	5.0	95.0	0.0	-1.61	0.87	0.81	2.86	3.5	0.003	0.59	0.0	0.04	16.73	0.00	1.973	11.42	2.71	4.5	95.3	0.1	0.33	1.20	0.89	0.81	2.52	12262	1371	7	66	4	0	0	logfile
✘	7Xi9	33200	2024-07-19	2022-04-12	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7620	870	8	24	4	232	0	logfile
✘	7XiB	33201	2024-07-19	2022-04-12	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7178	815	8	24	2	196	0	logfile
✘	7Uo0	26636	2024-07-20	2022-04-12	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10697	112	4	455	7	0	0	logfile
✔	7Uo2	26638	2024-07-19	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	26.44	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	2.9	0.008	1.02	0.0	0.05	27.29	0.01	1.816	35.69	2.04	20.0	80.0	0.0	-3.44	0.75	0.88	0.81	1.81	6735	112	3	271	3	0	0	logfile
✔	7ZJH	14748	2024-07-22	2022-04-11	3.39	3.74	3.43	3.6	0.002	0.52	0.0	0.04	11.15	0.00	2.223	5.18	2.73	7.5	92.4	0.1	-0.54	0.68	0.81	1.89	3.6	0.004	0.68	0.0	0.04	14.64	0.00	2.190	8.17	2.63	8.6	91.2	0.2	-0.13	0.98	0.70	0.84	1.72	18984	2344	4	0	0	0	0	logfile
✔	7UNK	26625	2024-07-21	2022-04-11	3.45	3.69	3.50	3.6	0.003	0.66	0.0	0.04	15.44	0.01	2.169	7.74	0.75	3.0	97.0	0.0	1.09	0.72	0.83	0.68	3.6	0.003	0.90	1.0	0.04	16.97	0.00	2.199	8.87	1.50	2.7	97.3	0.0	1.51	0.46	0.76	0.88	0.31	10992	1401	4	0	0	0	0	logfile

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