Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZJi	14749	2024-07-22	2022-04-11	3.4	3.74	3.36	3.6	0.003	0.66	0.0	0.04	14.20	0.00	2.197	10.45	0.10	8.3	91.5	0.3	-0.82	0.69	0.77	1.05	3.6	0.004	0.73	0.0	0.04	16.32	0.00	2.084	11.95	2.22	9.5	90.2	0.3	-0.78	1.28	0.69	0.81	1.00	19231	2375	4	0	0	0	0	logfile
✔	7ZJH	14748	2024-07-22	2022-04-11	3.39	3.74	3.43	3.6	0.002	0.52	0.0	0.04	11.15	0.00	2.223	5.18	2.73	7.5	92.4	0.1	-0.54	0.68	0.81	1.89	3.6	0.004	0.68	0.0	0.04	14.64	0.00	2.190	8.17	2.63	8.6	91.2	0.2	-0.13	0.98	0.70	0.84	1.72	18984	2344	4	0	0	0	0	logfile
✔	7UNK	26625	2024-07-21	2022-04-11	3.45	3.69	3.50	3.6	0.003	0.66	0.0	0.04	15.44	0.01	2.169	7.74	0.75	3.0	97.0	0.0	1.09	0.72	0.83	0.68	3.6	0.003	0.90	1.0	0.04	16.97	0.00	2.199	8.87	1.50	2.7	97.3	0.0	1.51	0.46	0.76	0.88	0.31	10992	1401	4	0	0	0	0	logfile
✔	7ZJG	14747	2024-07-22	2022-04-11	3.49	3.94	3.50	3.8	0.003	0.64	0.0	0.04	13.03	0.00	2.241	9.59	0.52	8.3	91.3	0.3	-0.33	0.65	0.75	1.88	3.8	0.004	0.69	0.0	0.04	15.21	0.00	2.113	12.39	2.50	8.5	91.2	0.3	-0.07	0.58	0.66	0.80	1.71	19532	2396	4	0	0	0	0	logfile
✔	7ZJD	14745	2024-07-22	2022-04-10	2.94	3.35	2.98	3.2	0.003	0.56	0.0	0.04	14.12	0.00	2.311	5.44	0.00	6.6	93.1	0.3	0.00	0.66	0.84	2.31	3.2	0.005	0.66	0.0	0.04	16.37	0.00	2.285	7.11	1.58	7.8	91.9	0.3	0.43	0.93	0.65	0.85	2.49	19360	2388	4	0	0	0	0	logfile
✔	7UNE	26622	2024-07-27	2022-04-10	3.73	2.92	3.62	3.3	0.007	0.97	0.0	0.06	15.56	0.01	2.254	4.94	0.47	5.5	94.5	0.0	-5.40	0.54	0.78	2.44	3.2	0.003	0.64	0.0	0.04	17.27	0.00	2.097	9.32	2.97	4.7	95.3	0.0	-1.54	1.55	0.54	0.79	1.70	36209	4663	14	0	0	0	0	logfile
✔	7ZJE	14746	2024-07-22	2022-04-10	3.12	3.70	3.28	3.6	0.002	0.57	0.0	0.04	11.99	0.00	2.254	7.29	0.19	8.3	91.1	0.5	0.64	0.66	0.80	1.92	3.6	0.002	0.59	0.0	0.04	14.69	0.00	2.183	8.12	0.67	8.1	91.4	0.5	1.40	1.25	0.64	0.80	1.81	19284	2380	4	0	0	0	0	logfile
✔	7XHT	33198	2024-07-19	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	21.15	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.003	0.54	0.0	0.03	21.60	0.00	2.004	6.81	1.46	1.5	98.5	0.0	0.98	0.35	0.65	0.85	4.88	7839	395	6	220	3	0	0	logfile
✔	7XHN	33196	2024-07-23	2022-04-09	3.71	3.96	3.74	3.8	0.011	1.26	0.0	0.06	19.32	0.01	1.828	35.23	1.25	8.6	90.7	0.7	-2.92	0.75	0.72	1.04	3.8	0.004	0.90	0.0	0.05	19.35	0.00	2.056	21.41	3.96	7.7	91.9	0.4	-1.22	1.43	0.74	0.70	0.89	23364	2888	20	50	0	0	0	logfile
✔	7UNA	26618	2024-07-22	2022-04-09	4.0	3.57	3.79	3.8	0.013	1.02	0.0	0.04	18.09	0.01	1.980	13.79	0.00	7.1	92.9	0.0	-0.95	0.55	0.71	—	3.8	0.004	0.60	0.0	0.04	19.95	0.00	1.998	14.65	3.14	6.6	93.4	0.0	0.26	0.62	0.56	0.75	—	18414	1132	12	0	4	0	9203	logfile
✔	7XHo	33197	2024-07-23	2022-04-09	3.29	3.57	3.30	3.5	0.004	0.91	2.0	0.05	17.66	0.00	1.860	19.54	0.78	6.7	93.0	0.3	-2.33	0.74	0.72	1.32	3.5	0.004	0.79	0.0	0.04	18.30	0.00	2.056	20.59	3.81	7.5	92.4	0.1	-0.94	1.36	0.76	0.79	1.18	22243	2876	17	0	0	0	0	logfile
✔	7UN6	26614	2024-07-19	2022-04-09	3.3	3.43	3.19	3.6	0.004	0.60	0.0	0.04	13.87	0.00	1.879	11.49	0.00	5.0	95.0	0.0	-0.89	0.49	0.57	2.11	3.6	0.003	0.62	0.0	0.04	16.27	0.00	2.089	12.10	3.17	5.0	95.0	0.0	0.01	0.61	0.58	0.70	1.72	9042	1118	3	0	0	0	0	logfile
✔	7ZJ7	14743	2024-07-20	2022-04-08	3.95	4.15	3.84	4.0	0.013	1.90	0.0	0.09	17.47	0.02	2.329	1.87	0.55	4.8	95.2	0.0	-3.03	0.80	0.81	2.04	4.0	0.003	0.69	0.0	0.04	15.28	0.00	2.242	7.63	1.02	4.3	95.7	0.0	-0.23	0.75	0.80	0.80	1.67	11958	1458	18	0	36	0	0	logfile
✔	7ZJ6	14742	2024-07-20	2022-04-08	2.6	2.32	2.61	2.6	0.013	1.77	0.0	0.09	18.23	0.01	2.524	1.04	0.46	3.9	96.1	0.0	-1.99	0.67	0.82	4.01	2.6	0.003	0.62	0.0	0.04	15.58	0.00	2.239	3.20	1.78	1.8	98.2	0.0	0.33	1.18	0.71	0.83	3.79	12282	1482	18	0	48	0	0	logfile
✔	7ZiR	14738	2024-07-18	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.13	0.00	2.312	0.55	0.00	3.7	96.3	0.0	-3.81	1.03	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	7UN3	26612	2024-07-20	2022-04-08	3.5	3.80	3.51	3.8	0.003	0.61	0.0	0.04	13.63	0.01	1.936	13.52	0.00	5.3	94.7	0.0	-0.87	0.63	0.63	1.49	3.8	0.004	0.70	0.0	0.05	16.58	0.00	2.205	14.64	2.94	4.6	95.4	0.0	-0.39	1.12	0.65	0.68	2.04	9423	1164	4	0	0	0	0	logfile
✔	7ZJ8	14744	2024-07-21	2022-04-08	3.1	2.96	3.14	3.1	0.014	1.87	0.0	0.10	18.14	0.02	1.471	1.49	0.23	5.3	94.7	0.0	-2.59	0.80	0.87	3.61	3.1	0.003	0.60	0.0	0.04	14.97	0.00	2.260	3.43	1.70	2.0	98.0	0.0	0.41	1.21	0.81	0.86	3.02	12342	1482	18	0	51	0	0	logfile
✔	7UN5	26613	2024-07-18	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	11.64	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.75	0.0	0.04	15.00	0.00	2.264	9.55	3.85	7.7	92.3	0.0	-3.90	1.12	0.34	0.74	4.85	4380	620	10	0	0	0	0	logfile
✔	7ZJ5	14741	2024-07-20	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	23.36	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	26.06	0.01	1.650	65.92	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	2	374	1	0	4030	logfile
✔	7ZJ2	14739	2024-07-18	2022-04-08	3.32	3.56	—	3.6	0.014	2.21	0.0	0.08	15.29	0.01	2.548	0.00	0.00	2.3	97.7	0.0	-3.75	0.47	0.78	4.64	3.6	0.007	0.75	0.0	0.03	16.73	0.00	2.133	17.07	8.91	3.9	96.1	0.0	-3.48	1.43	0.43	0.76	4.95	3792	540	12	0	0	0	0	logfile

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