Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VUE	43529	2024-08-11	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.004	0.67	0.0	0.04	15.91	0.00	2.434	8.22	2.91	3.9	96.1	0.0	0.06	1.72	0.78	0.84	2.21	21501	2754	15	0	3	0	0	logfile
✔	8RU2	19503	2024-08-06	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.67	0.0	0.04	18.27	0.00	1.962	10.87	3.36	4.3	95.6	0.1	-0.23	1.33	0.72	0.76	0.89	14773	1849	8	0	6	0	0	logfile
✔	8VT2	43516	2024-08-04	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.004	0.60	0.0	0.05	14.23	0.00	2.520	3.97	1.03	5.5	94.5	0.0	0.03	0.28	0.65	0.81	3.29	10674	1362	12	0	18	0	0	logfile
✔	8RTB	19485	2024-08-05	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.006	0.88	0.0	0.05	16.06	0.01	2.396	18.43	2.33	5.1	94.9	0.0	-0.38	1.75	0.70	0.85	1.12	14132	1804	9	0	0	0	0	logfile
✔	8VT3	43517	2024-08-04	2024-01-25	3.33	3.63	3.39	3.6	0.011	0.87	0.0	0.06	18.19	0.01	2.153	4.40	0.00	8.1	91.9	0.0	-3.58	0.79	0.87	3.85	3.6	0.003	0.59	0.0	0.04	14.61	0.00	2.505	2.97	1.03	4.4	95.6	0.0	-1.61	0.96	0.77	0.87	2.99	10758	1377	15	0	18	0	0	logfile
✔	8RT9	19483	2024-08-06	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.69	0.0	0.04	16.54	0.00	2.363	9.76	1.93	1.7	98.3	0.0	2.96	0.71	0.69	0.87	2.61	17866	2395	10	0	0	0	0	logfile
✔	8RT5	19479	2024-08-06	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8VSU	43506	2024-08-06	2024-01-24	2.86	3.11	2.98	3.2	0.013	1.76	0.0	0.09	12.49	0.01	2.529	0.13	0.12	1.8	98.2	0.0	-1.20	0.70	0.85	4.70	3.2	0.004	0.92	0.0	0.04	15.92	0.00	2.322	1.71	0.84	2.1	97.9	0.0	1.62	1.83	0.64	0.86	3.53	15240	941	4	0	1	0	7646	logfile
✔	8Y1B	38830	2024-08-10	2024-01-24	2.8	3.01	2.88	3.0	0.007	0.85	0.0	0.07	15.65	0.01	2.273	3.23	9.92	6.0	94.0	0.0	-3.12	0.63	0.67	2.78	3.0	0.002	0.58	0.0	0.05	14.76	0.00	1.959	3.82	2.87	3.7	96.3	0.0	-0.61	0.52	0.75	0.85	2.30	29541	3624	21	0	93	0	0	logfile
✔	8RSC	19476	2024-08-11	2024-01-24	3.6	3.11	4.01	3.3	0.003	0.64	0.0	0.04	15.63	0.00	1.995	6.21	0.11	7.0	92.9	0.0	-1.45	0.68	0.74	2.12	3.1	0.004	0.72	0.0	0.05	16.81	0.00	2.369	4.53	2.64	5.8	94.2	0.0	-0.47	1.38	0.69	0.76	1.53	31874	4457	12	0	10	0	0	logfile
✔	8Y19	38828	2024-08-10	2024-01-24	2.3	2.48	2.41	2.5	0.006	0.83	0.0	0.06	14.35	0.01	2.279	1.52	6.19	4.3	95.7	0.0	-1.92	0.57	0.64	4.23	2.5	0.003	0.67	0.0	0.05	14.42	0.00	2.263	3.14	2.87	3.8	96.2	0.0	-0.24	1.21	0.75	0.86	3.98	29541	3624	21	0	93	0	0	logfile
✘	8RSB	19475	2024-08-11	2024-01-24	3.4	2.80	3.33	3.2	0.003	0.71	0.0	0.05	15.79	0.00	1.947	6.08	0.14	4.4	95.6	0.0	-0.48	0.67	0.70	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31884	4452	12	0	12	0	0	logfile
✔	8Y1H	38836	2024-08-10	2024-01-24	3.16	3.42	3.30	3.2	0.006	0.94	0.0	0.05	17.12	0.01	2.224	6.06	15.19	8.0	92.0	0.0	-4.56	0.62	0.55	1.14	3.2	0.003	0.67	1.0	0.05	15.56	0.00	2.420	8.98	4.90	6.5	93.5	0.0	-2.14	1.69	0.70	0.70	1.03	29541	3624	21	0	93	0	0	logfile
✔	8Y1A	38829	2024-08-10	2024-01-24	2.8	2.97	2.85	2.9	0.010	1.01	0.0	0.07	16.23	0.01	2.013	3.57	11.34	6.6	93.2	0.2	-3.08	0.62	0.66	3.09	2.9	0.003	0.76	0.0	0.05	15.65	0.01	2.311	4.68	4.41	5.4	94.6	0.0	-1.10	1.20	0.74	0.85	2.67	29541	3624	21	0	93	0	0	logfile
✔	8VSP	43501	2024-08-04	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.066	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.55	0.0	0.04	14.04	0.01	2.574	5.44	1.87	3.3	96.7	0.0	2.06	0.55	0.78	0.79	3.27	11388	1476	12	0	3	0	0	logfile
✔	8Y1F	38834	2024-08-10	2024-01-24	2.8	3.01	2.88	3.0	0.005	0.76	0.0	0.05	14.27	0.01	2.272	2.00	6.87	4.6	95.3	0.0	-2.79	0.65	0.72	3.57	3.0	0.003	0.61	0.0	0.04	14.28	0.00	2.394	3.07	3.60	4.2	95.8	0.0	-0.67	0.51	0.75	0.87	3.15	29541	3624	21	0	93	0	0	logfile
✔	8Y1C	38831	2024-08-10	2024-01-24	2.8	2.97	2.92	2.9	0.007	0.88	0.0	0.06	15.95	0.01	2.257	4.54	11.49	6.9	93.1	0.0	-3.39	0.60	0.57	1.86	3.0	0.002	0.59	0.0	0.04	15.01	0.00	2.368	5.47	3.33	4.5	95.5	0.0	-0.88	0.58	0.70	0.78	1.55	29541	3624	21	0	93	0	0	logfile
✔	8Y1G	38835	2024-08-10	2024-01-24	2.99	3.22	3.09	3.1	0.010	0.98	0.0	0.06	16.47	0.01	2.222	4.94	12.14	8.0	92.0	0.0	-4.04	0.66	0.67	2.48	3.1	0.004	0.66	0.0	0.05	15.33	0.01	2.112	6.13	3.39	5.8	94.2	0.0	-1.38	1.23	0.74	0.81	2.25	29541	3624	21	0	93	0	0	logfile
✔	8RRR	19462	2024-08-02	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8Y0Y	38823	2024-08-03	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile

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