Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8Y7Y	39026	2024-08-03	2024-02-05	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6860	861	13	0	27	0	0	logfile
✔	8Y81	39029	2024-08-03	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.00	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.59	0.0	0.04	16.02	0.00	2.462	8.81	1.72	3.9	96.1	0.0	0.50	1.13	0.57	0.77	2.43	8915	1077	13	0	14	0	0	logfile
✔	8RWK	19549	2024-08-06	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.5	0.003	0.59	0.0	0.04	16.10	0.00	2.518	4.92	2.32	2.6	97.4	0.0	0.92	2.41	0.73	0.77	2.27	15416	1980	8	0	4	0	0	logfile
✔	8VXC	43616	2024-08-04	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.004	0.65	0.0	0.04	17.37	0.00	2.472	10.81	1.79	4.1	95.9	0.0	0.30	0.60	0.75	0.73	1.72	9390	1139	3	22	0	0	0	logfile
✘	8Y7E	39013	2024-08-09	2024-02-04	4.66	8.34	13.59	40.0	0.023	1.39	0.0	0.09	15.11	0.01	2.073	10.06	3.83	3.1	96.9	0.0	-1.68	0.32	0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26949	3426	19	80	4	0	0	logfile
✔	8VX9	43613	2024-08-04	2024-02-03	2.65	2.17	2.70	1.9	0.004	0.62	0.0	0.04	13.77	0.00	2.221	11.85	0.08	4.1	95.9	0.0	-0.43	0.74	0.70	2.71	1.9	0.005	0.73	0.0	0.05	16.58	0.01	2.433	13.67	1.26	4.3	95.7	0.0	-0.27	3.19	0.74	0.71	2.28	11244	1433	2	0	0	0	0	logfile
✔	8Y6P	38994	2024-08-04	2024-02-03	3.9	4.26	4.01	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.003	0.79	0.0	0.05	17.08	0.00	2.499	12.00	4.03	7.5	91.7	0.8	-0.64	2.44	0.82	0.78	0.94	9977	1228	1	0	0	0	0	logfile
✔	8VXA	43615	2024-08-04	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.004	0.63	0.0	0.04	18.17	0.00	2.465	10.13	3.38	2.6	97.4	0.0	0.77	0.58	0.78	0.77	2.42	9431	1139	3	24	0	0	0	logfile
✔	8VWW	43604	2024-08-06	2024-02-02	3.9	4.09	3.83	4.1	0.003	0.63	0.0	0.04	13.70	0.01	2.056	4.35	2.05	4.5	95.4	0.1	-0.82	0.67	0.73	2.95	4.1	0.003	0.65	0.0	0.04	15.44	0.00	2.415	8.77	1.28	4.5	95.5	0.0	-0.23	1.33	0.71	0.77	1.96	13801	899	5	0	0	0	6855	logfile
✔	8VWP	43593	2024-08-06	2024-02-02	3.21	3.46	3.23	3.5	0.012	1.50	4.0	0.09	10.39	0.01	2.359	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.003	0.59	0.0	0.05	13.59	0.00	2.612	2.48	1.36	2.4	97.6	0.0	0.32	0.49	0.77	0.89	4.06	14820	2012	8	0	4	0	0	logfile
✔	8Y6A	38983	2024-08-04	2024-02-02	2.72	3.72	2.80	3.2	0.004	0.73	0.0	0.06	15.69	0.01	2.212	14.67	0.48	6.5	93.0	0.5	-1.89	0.79	0.64	1.10	3.3	0.004	0.92	0.0	0.05	15.93	0.01	2.082	15.77	1.81	7.3	92.6	0.1	-1.51	0.96	0.80	0.66	1.33	9786	1206	10	0	16	0	0	logfile
✔	8Y65	38966	2024-08-02	2024-02-01	3.51	3.77	3.42	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.003	0.63	0.0	0.04	15.31	0.00	2.595	10.82	1.86	3.2	96.8	0.0	1.58	0.37	0.46	0.58	0.69	3565	467	2	0	1	0	0	logfile
✔	8Y66	38968	2024-08-02	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.004	0.66	0.0	0.04	16.29	0.00	2.485	7.24	3.65	2.4	97.6	0.0	1.71	0.35	0.47	0.70	1.20	3606	467	2	0	1	0	0	logfile
✔	8RV2	19522	2024-08-06	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.58	0.0	0.04	17.19	0.00	1.950	7.00	2.36	2.9	97.1	0.0	0.70	0.97	0.78	0.82	1.90	17248	2178	10	0	9	0	0	logfile
✔	8Y5J	38937	2024-08-08	2024-01-31	2.94	4.00	3.10	3.5	0.004	0.62	0.0	0.05	13.62	0.01	2.216	6.70	0.08	6.5	93.2	0.2	-0.78	0.87	0.87	2.60	3.5	0.003	0.59	0.0	0.04	14.85	0.00	2.438	5.90	1.28	6.5	93.3	0.2	-0.68	1.02	0.86	0.87	2.37	24146	3018	10	0	35	0	0	logfile
✔	8VUZ	43545	2024-08-03	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.75	0.0	0.05	17.61	0.00	2.476	10.84	5.01	6.1	93.9	0.0	0.13	0.44	0.77	0.84	1.75	6626	869	4	0	0	0	0	logfile
✔	8VV3	43548	2024-08-05	2024-01-30	2.61	2.94	2.71	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.004	0.62	0.0	0.04	16.90	0.00	2.628	10.31	4.66	4.2	95.8	0.0	2.44	1.58	0.59	0.75	2.13	12172	1548	8	0	4	0	0	logfile
✔	8RTT	19496	2024-08-07	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.317	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.004	0.59	0.0	0.04	16.77	0.00	1.918	6.46	2.10	2.6	97.4	0.0	1.11	0.37	0.79	0.86	1.94	18155	2274	16	0	14	0	0	logfile
✔	8VUE	43529	2024-08-11	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.004	0.67	0.0	0.04	15.91	0.00	2.434	8.22	2.91	3.9	96.1	0.0	0.06	1.72	0.78	0.84	2.21	21501	2754	15	0	3	0	0	logfile
✔	8RU2	19503	2024-08-06	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.67	0.0	0.04	18.27	0.00	1.962	10.87	3.36	4.3	95.6	0.1	-0.23	1.33	0.72	0.76	0.89	14773	1849	8	0	6	0	0	logfile

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