Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XJL	38400	2024-08-03	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.002	0.54	0.0	0.04	14.58	0.00	2.382	5.14	1.69	1.6	98.4	0.0	2.17	0.59	0.67	0.79	2.95	8846	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2024-08-03	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.74	0.00	2.440	5.71	2.22	1.6	98.4	0.0	2.22	0.53	0.68	0.83	3.80	8849	1140	6	0	1	0	0	logfile
✔	8XJ6	38394	2024-08-08	2023-12-20	3.32	3.84	3.59	3.7	0.005	0.75	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.005	0.71	0.0	0.05	15.22	0.00	2.378	11.41	1.66	4.3	95.4	0.3	-0.32	1.23	0.77	0.81	1.61	22688	2807	12	0	8	0	0	logfile
✔	8XJ4	38393	2024-08-02	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.70	0.0	0.04	18.40	0.01	2.424	4.08	1.10	3.3	96.7	0.0	1.50	1.18	0.70	0.79	2.64	5820	693	6	0	12	0	0	logfile
✔	8XJ7	38395	2024-08-07	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.003	0.60	0.0	0.04	16.71	0.00	2.036	6.45	2.06	5.2	94.5	0.3	-0.32	0.33	0.74	0.84	3.07	19595	2420	13	6	9	0	0	logfile
✔	8XJ8	38396	2024-08-06	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.60	0.0	0.04	17.71	0.00	2.097	4.98	1.89	3.9	95.6	0.5	0.22	2.93	0.74	0.86	2.90	15904	1957	10	6	6	0	0	logfile
✔	8VE0	43160	2024-08-02	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.56	0.0	0.05	15.25	0.00	2.542	6.83	1.42	1.5	98.5	0.0	0.93	0.68	0.73	0.81	3.87	3527	466	6	0	2	0	0	logfile
✔	8VE4	43164	2024-08-02	2023-12-18	3.3	3.35	3.10	3.3	0.003	0.56	0.0	0.05	10.45	0.01	2.302	7.13	0.00	1.3	98.7	0.0	1.77	0.74	0.75	4.32	3.3	0.003	0.66	0.0	0.05	13.08	0.01	2.597	8.83	4.66	2.6	97.4	0.0	-0.36	0.43	0.75	0.78	3.61	3148	465	4	0	0	0	0	logfile
✔	8VE7	43167	2024-08-02	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.515	8.36	2.54	3.1	96.9	0.0	2.88	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8VE6	43166	2024-08-02	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.61	0.0	0.05	12.10	0.01	2.610	4.11	0.00	1.5	98.5	0.0	-0.17	0.43	0.78	0.79	—	3178	465	5	0	1	0	0	logfile
✔	8Ri9	19184	2024-08-02	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.005	0.67	0.0	0.05	11.51	0.00	2.422	7.35	0.48	10.9	89.1	0.0	-3.16	0.64	0.30	0.66	6.35	4230	295	5	0	0	0	2180	logfile
✔	8VE5	43165	2024-08-02	2023-12-18	3.4	3.67	3.31	3.8	0.005	0.58	0.0	0.05	11.51	0.01	2.216	7.40	0.00	2.2	97.8	0.0	0.60	0.72	0.80	4.97	3.8	0.004	0.60	0.0	0.05	14.51	0.01	2.594	5.70	2.97	3.1	96.9	0.0	0.24	0.38	0.71	0.81	4.76	3382	467	5	0	1	0	0	logfile
✔	8VE1	43161	2024-08-02	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.003	0.60	0.0	0.05	15.74	0.00	2.352	5.47	1.56	2.4	97.6	0.0	-0.15	0.39	0.76	0.87	5.33	3656	466	10	0	2	27	0	logfile
✔	8VE2	43162	2024-08-02	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.003	0.58	0.0	0.05	12.90	0.01	2.624	7.50	5.05	2.4	97.6	0.0	0.19	0.68	0.76	0.79	3.74	3105	465	4	0	0	0	0	logfile
✔	8VDZ	43157	2024-08-08	2023-12-18	2.7	2.80	2.60	2.8	0.003	0.46	0.0	0.04	11.96	0.00	2.056	4.30	0.00	0.2	99.8	0.0	3.43	0.72	0.84	4.07	2.8	0.003	0.45	0.0	0.04	16.64	0.00	2.577	4.66	1.37	0.4	99.6	0.0	3.15	0.33	0.73	0.87	3.41	23700	3087	24	0	0	0	0	logfile
✔	8RHZ	19179	2024-08-06	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.2	0.003	0.53	0.0	0.04	13.23	0.00	2.077	3.03	1.67	3.0	97.0	0.0	3.48	0.91	0.76	0.78	2.01	15223	2439	6	0	6	0	0	logfile
✔	8XH7	38343	2024-08-03	2023-12-17	3.52	3.84	3.46	3.9	0.005	0.91	0.0	0.06	14.93	0.00	2.376	7.40	2.17	4.5	95.5	0.0	2.45	0.57	0.77	1.35	3.9	0.003	0.64	0.0	0.03	17.02	0.00	2.505	8.66	3.02	4.6	95.4	0.0	3.54	0.72	0.55	0.78	1.40	7902	966	6	0	0	0	0	logfile
✔	8XH6	38342	2024-08-02	2023-12-17	3.52	3.74	3.34	3.8	0.003	0.59	0.0	0.04	14.08	0.00	2.397	7.22	0.00	2.8	97.2	0.0	1.24	0.52	0.75	0.63	3.8	0.003	0.60	0.0	0.03	16.75	0.00	2.484	7.58	1.45	2.8	97.2	0.0	2.91	0.40	0.53	0.76	1.10	2634	322	2	0	0	0	0	logfile
✔	8XGR	38330	2024-08-04	2023-12-15	3.2	3.95	3.21	3.7	0.003	0.56	0.0	0.04	13.83	0.00	2.126	7.33	0.22	3.7	96.3	0.0	-2.13	0.69	0.74	2.11	3.7	0.003	0.81	0.0	0.05	16.35	0.00	2.422	12.15	3.56	2.9	97.1	0.0	-0.78	0.99	0.68	0.78	0.90	8206	1049	5	0	0	0	0	logfile
✔	8VCH	43136	2024-08-03	2023-12-14	2.55	2.23	2.74	3.3	0.004	0.58	0.0	0.04	15.04	0.00	2.260	5.83	0.78	2.2	97.8	0.0	2.09	0.72	0.80	2.33	3.3	0.003	0.53	0.0	0.04	15.95	0.00	2.522	5.23	2.59	2.1	97.9	0.0	2.99	0.29	0.74	0.82	1.58	7614	1012	6	0	2	0	0	logfile

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