Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VCR	43139	2024-08-06	2023-12-14	3.0	2.18	3.02	2.0	0.008	0.77	0.0	0.05	13.52	0.01	2.139	3.13	0.00	4.0	96.0	0.0	0.07	0.80	0.80	3.92	1.9	0.008	0.72	0.0	0.05	15.86	0.01	2.461	5.00	2.23	3.6	96.4	0.0	0.64	0.40	0.81	0.82	4.04	15987	2040	18	0	21	0	0	logfile
✔	8VCJ	43138	2024-08-11	2023-12-14	3.32	3.63	3.39	3.6	0.003	0.64	0.0	0.04	17.52	0.00	2.002	4.69	0.03	4.6	95.4	0.0	-0.73	0.69	0.83	2.26	3.6	0.004	0.72	1.0	0.04	18.60	0.00	1.680	5.13	1.51	5.0	95.0	0.0	-0.44	0.92	0.69	0.84	2.02	32232	3742	20	100	16	0	0	logfile
✔	8RH2	19166	2024-08-07	2023-12-14	3.12	3.16	3.04	3.2	0.005	0.58	0.0	0.05	14.37	0.01	2.205	7.05	0.05	1.9	98.1	0.0	0.07	0.78	0.86	3.67	3.2	0.003	0.51	0.0	0.04	15.69	0.00	2.562	5.32	1.80	2.2	97.8	0.0	0.33	0.32	0.81	0.88	3.32	19152	2421	9	0	0	0	0	logfile
✔	8VCT	43140	2024-08-10	2023-12-14	3.83	4.11	3.90	4.1	0.003	0.69	0.0	0.04	18.15	0.01	2.070	6.37	0.00	4.0	96.0	0.0	-1.11	0.69	0.76	1.24	4.1	0.004	0.67	0.0	0.04	19.69	0.00	1.895	7.63	2.76	5.2	94.7	0.0	-0.73	0.45	0.70	0.76	1.05	29000	3338	18	100	14	0	0	logfile
✔	8VCH	43136	2024-08-03	2023-12-14	2.55	2.23	2.74	3.3	0.004	0.58	0.0	0.04	15.04	0.00	2.260	5.83	0.78	2.2	97.8	0.0	2.09	0.72	0.80	2.33	3.3	0.003	0.53	0.0	0.04	15.95	0.00	2.522	5.23	2.59	2.1	97.9	0.0	2.99	0.29	0.74	0.82	1.58	7614	1012	6	0	2	0	0	logfile
✔	8RH0	19164	2024-08-07	2023-12-14	3.44	3.40	3.32	3.4	0.005	0.62	0.0	0.05	14.04	0.01	2.202	6.74	0.00	1.1	98.9	0.0	0.19	0.79	0.85	3.38	3.4	0.004	0.56	0.0	0.04	15.79	0.00	2.507	4.72	2.24	2.2	97.8	0.0	0.24	1.27	0.78	0.86	3.15	19137	2421	9	0	0	0	0	logfile
✔	8RH1	19165	2024-08-07	2023-12-14	3.45	3.21	3.42	3.4	0.008	0.85	0.0	0.06	13.62	0.01	2.230	10.64	0.00	2.4	97.6	0.0	-0.79	0.76	0.79	2.71	3.3	0.006	0.65	0.0	0.04	15.66	0.00	2.462	8.18	2.58	2.5	97.5	0.0	-0.38	1.42	0.81	0.83	2.47	19560	2442	9	0	0	0	0	logfile
✔	8RGH	19133	2024-08-04	2023-12-13	3.9	4.34	3.89	4.0	0.012	1.88	4.0	0.10	14.04	0.02	2.504	0.53	0.00	4.7	95.3	0.0	-1.05	0.82	0.66	1.27	4.0	0.004	0.75	0.0	0.04	15.97	0.00	2.318	13.89	1.47	4.3	95.7	0.0	0.50	0.92	0.84	0.70	1.13	9682	1287	6	0	0	0	0	logfile
✔	8VC1	43129	2024-08-05	2023-12-13	2.85	3.23	2.92	3.2	0.012	1.46	0.0	0.06	17.03	0.01	2.196	4.03	0.30	2.1	97.9	0.0	-1.02	0.59	0.82	3.63	3.3	0.003	0.54	0.0	0.04	16.26	0.00	2.631	8.13	1.48	1.7	98.3	0.0	3.90	0.41	0.58	0.82	2.04	13128	1564	8	0	32	0	0	logfile
✔	8RGG	19132	2024-08-03	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.74	0.0	0.04	15.09	0.00	2.433	10.03	3.25	5.9	94.1	0.0	0.65	2.90	0.75	0.59	—	7679	1156	7	0	0	0	0	logfile
✔	8VC2	43130	2024-08-05	2023-12-13	3.98	4.39	3.99	4.4	0.006	0.84	0.0	0.04	14.09	0.01	2.353	2.91	0.31	2.4	97.6	0.0	-0.98	0.57	0.71	1.08	4.4	0.003	0.79	0.0	0.04	16.41	0.00	2.596	9.47	4.40	2.1	97.9	0.0	2.87	2.21	0.56	0.73	0.88	11796	1516	8	0	4	0	0	logfile
✔	8RFE	19118	2024-08-08	2023-12-12	3.8	4.63	3.96	4.1	0.003	0.61	0.0	0.04	16.60	0.00	2.148	11.81	0.14	7.6	91.6	0.8	-0.82	0.84	0.80	0.80	4.1	0.002	0.67	0.0	0.04	14.54	0.00	2.473	9.82	0.54	7.3	92.1	0.7	-0.52	0.39	0.85	0.83	0.85	21776	2765	3	0	12	0	0	logfile
✔	8RF0	19114	2024-08-08	2023-12-12	3.4	4.01	3.68	3.9	0.004	0.73	1.0	0.05	16.92	0.01	2.171	10.52	0.45	8.8	90.3	0.9	-1.04	0.70	0.59	0.72	3.9	0.004	0.83	0.0	0.05	16.16	0.01	2.362	11.21	1.76	9.4	90.0	0.6	-1.40	1.10	0.77	0.76	1.05	21922	2780	4	0	19	0	0	logfile
✔	8RFH	19121	2024-08-05	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.004	0.83	0.0	0.05	16.14	0.00	2.401	17.69	2.28	4.5	95.5	0.0	0.29	1.03	0.82	0.77	0.74	11802	1460	4	0	2	0	0	logfile
✔	8RFG	19119	2024-08-08	2023-12-12	3.35	3.85	3.48	3.7	0.004	0.76	0.0	0.04	19.69	0.00	2.000	10.70	0.14	8.9	90.3	0.8	-1.57	0.82	0.82	2.28	3.7	0.004	0.70	0.0	0.04	15.10	0.00	2.467	8.89	0.77	8.9	90.4	0.7	-0.88	0.40	0.79	0.82	1.97	21879	2765	5	0	27	2	0	logfile
✔	8RF9	19116	2024-08-07	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.68	0.0	0.04	15.53	0.00	2.435	7.93	1.18	9.2	90.0	0.8	-0.70	1.34	0.73	0.83	1.91	20646	2642	1	0	0	0	0	logfile
✔	8XEJ	38291	2024-08-03	2023-12-12	3.66	3.95	3.64	3.9	0.004	0.84	0.0	0.04	13.95	0.00	2.222	7.98	3.64	4.9	95.1	0.0	0.15	0.66	0.77	1.42	3.9	0.004	0.75	0.0	0.04	16.12	0.00	2.450	6.09	4.81	4.1	95.9	0.0	1.24	2.84	0.70	0.81	2.05	7153	916	5	0	1	0	0	logfile
✘	8REV	19109	2024-08-03	2023-12-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7797	898	7	26	2	0	0	logfile
✔	8XE9	38283	2024-08-02	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.72	0.0	0.04	15.16	0.00	2.406	8.11	3.40	7.5	92.5	0.0	-1.07	0.94	0.61	0.86	2.81	3266	420	3	0	0	0	0	logfile
✔	8XEA	38284	2024-08-10	2023-12-11	3.42	4.58	3.52	3.5	0.003	0.82	0.0	0.05	16.74	0.01	2.204	8.29	0.45	7.4	92.5	0.1	-1.84	0.87	0.74	-0.24	3.5	0.011	1.06	4.0	0.05	16.92	0.01	1.974	15.57	2.32	8.0	91.9	0.2	-1.47	1.37	0.87	0.77	1.21	30213	3871	9	0	0	0	0	logfile

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