Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VAF	43090	2024-08-02	2023-12-11	3.5	3.70	3.53	3.6	0.003	0.59	0.0	0.04	15.27	0.00	2.216	6.11	0.00	5.2	94.8	0.0	1.47	0.81	0.84	2.47	3.6	0.003	0.54	0.0	0.04	16.99	0.00	2.556	4.80	1.77	4.7	95.3	0.0	1.59	0.39	0.81	0.85	2.40	4623	581	1	0	0	0	0	logfile
✔	8VAE	43089	2024-08-02	2023-12-11	3.7	3.91	3.77	3.8	0.003	0.68	0.0	0.04	15.27	0.00	2.251	9.01	0.00	2.9	97.1	0.0	1.75	0.83	0.81	1.63	3.8	0.003	0.66	0.0	0.04	17.06	0.00	2.549	8.36	2.36	3.1	96.9	0.0	1.99	0.77	0.83	0.82	1.51	4653	581	2	0	3	0	0	logfile
✔	8XE9	38283	2024-08-02	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.72	0.0	0.04	15.16	0.00	2.406	8.11	3.40	7.5	92.5	0.0	-1.07	0.94	0.61	0.86	2.81	3266	420	3	0	0	0	0	logfile
✔	8XEA	38284	2024-08-10	2023-12-11	3.42	4.58	3.52	3.5	0.003	0.82	0.0	0.05	16.74	0.01	2.204	8.29	0.45	7.4	92.5	0.1	-1.84	0.87	0.74	-0.24	3.5	0.011	1.06	4.0	0.05	16.92	0.01	1.974	15.57	2.32	8.0	91.9	0.2	-1.47	1.37	0.87	0.77	1.21	30213	3871	9	0	0	0	0	logfile
✔	8VAo	43097	2024-08-07	2023-12-11	2.8	2.12	2.86	2.0	0.003	0.51	0.0	0.04	13.27	0.01	2.338	2.86	0.00	2.3	97.7	0.0	-0.67	0.76	0.78	4.19	2.0	0.004	0.60	0.0	0.04	16.62	0.01	2.235	3.70	2.67	3.1	96.9	0.0	1.14	0.88	0.78	0.80	3.81	20154	1311	6	0	9	0	9942	logfile
✔	8XCS	38253	2024-08-02	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.54	0.0	0.04	16.72	0.00	2.446	4.06	1.47	1.9	98.1	0.0	1.74	0.89	0.49	0.93	5.70	3360	418	2	0	3	20	0	logfile
✔	8REB	19081	2024-08-10	2023-12-10	3.4	3.95	3.51	4.1	0.005	0.71	0.0	0.04	19.20	0.01	2.006	10.84	0.38	6.7	93.3	0.0	-0.58	0.63	0.34	0.40	3.5	0.004	0.83	0.0	0.05	19.56	0.01	1.891	15.14	1.88	6.6	93.4	0.1	-0.58	5.19	0.88	0.83	1.15	28681	3638	10	101	3	0	0	logfile
✔	8XD0	38261	2024-08-02	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.005	0.57	0.0	0.05	17.88	0.00	2.551	5.71	1.47	2.9	96.9	0.2	1.47	0.83	0.45	0.91	3.74	3357	417	2	0	2	14	0	logfile
✔	8RED	19083	2024-08-10	2023-12-10	3.9	4.13	3.86	3.8	0.005	0.68	0.0	0.04	19.76	0.01	2.088	10.12	0.41	6.4	93.5	0.0	-0.58	0.80	0.75	1.60	3.8	0.003	0.64	0.0	0.04	19.75	0.00	1.952	8.71	2.32	5.5	94.5	0.0	-0.03	1.18	0.88	0.84	1.42	28878	3617	10	105	3	0	0	logfile
✔	8XCW	38257	2024-08-02	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.003	0.53	0.0	0.04	16.94	0.00	2.428	4.98	1.47	2.7	97.3	0.0	1.91	0.41	0.48	0.92	3.31	3347	416	2	0	2	17	0	logfile
✔	8REC	19082	2024-08-10	2023-12-10	3.5	3.87	3.47	3.5	0.005	0.77	0.0	0.04	19.11	0.01	2.010	11.06	0.37	5.8	94.2	0.0	-0.57	0.82	0.76	1.44	3.4	0.004	0.79	2.0	0.04	19.25	0.00	1.822	10.97	3.17	6.1	93.8	0.1	-0.18	1.15	0.88	0.85	1.37	28965	3635	10	104	3	0	0	logfile
✔	8RE4	19079	2024-08-10	2023-12-10	2.8	3.82	2.89	3.0	0.006	0.84	0.0	0.06	18.84	0.01	1.931	14.53	1.66	6.1	93.7	0.2	-0.49	0.86	0.81	2.10	3.1	0.003	0.65	0.0	0.04	18.98	0.00	1.969	6.90	1.92	5.9	94.0	0.0	0.24	2.26	0.92	0.89	2.16	29165	3667	10	102	3	0	0	logfile
✔	8XD1	38262	2024-08-02	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.003	0.56	0.0	0.04	17.26	0.01	2.528	6.08	0.88	3.9	96.1	0.0	1.67	0.48	0.42	0.88	3.06	3307	416	2	0	1	9	0	logfile
✔	8REE	19084	2024-08-10	2023-12-10	3.8	4.28	4.01	4.1	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.005	0.86	0.0	0.05	19.72	0.00	1.870	15.67	2.48	7.2	92.7	0.1	-0.95	1.55	0.87	0.81	0.99	28605	3617	10	103	3	0	0	logfile
✔	8XD6	38267	2024-08-02	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.004	0.56	0.0	0.04	16.23	0.00	2.521	5.68	1.46	1.4	98.6	0.0	1.52	0.42	0.47	0.92	4.79	3402	419	2	0	4	44	0	logfile
✔	8XCV	38256	2024-08-02	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.89	0.00	2.544	5.62	0.59	2.2	97.8	0.0	1.78	0.85	0.48	0.91	4.40	3310	415	2	0	1	7	0	logfile
✔	8XCo	38249	2024-08-02	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.003	0.51	0.0	0.04	17.33	0.00	2.441	3.77	1.18	3.1	96.9	0.0	1.97	0.56	0.50	0.93	4.27	3335	416	2	0	1	14	0	logfile
✔	8REA	19080	2024-08-10	2023-12-10	3.4	3.79	3.47	3.4	0.003	0.60	0.0	0.04	18.95	0.01	2.108	8.71	0.23	5.6	94.4	0.0	-0.46	0.79	0.76	1.73	3.4	0.003	0.64	0.0	0.04	19.05	0.00	1.966	7.50	3.18	6.3	93.7	0.0	-0.03	2.03	0.88	0.87	1.73	28821	3668	10	100	3	0	0	logfile
✔	8XCT	38254	2024-08-02	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.005	0.56	0.0	0.04	16.54	0.00	2.478	4.07	1.18	3.4	96.4	0.2	1.55	1.73	0.43	0.90	4.40	3358	417	2	0	1	28	0	logfile
✔	8XCN	38248	2024-08-03	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.34	0.01	1.610	14.34	3.28	4.2	95.8	0.0	0.32	1.16	0.74	0.83	2.28	8601	1089	5	0	6	0	0	logfile

• ← previous
• Page 21 of 530
• next →