Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCJ	38245	2024-08-07	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.008	0.80	0.0	0.05	18.43	0.01	2.464	7.94	5.26	4.6	95.0	0.4	-0.80	0.23	0.76	0.89	4.08	19809	2526	6	0	0	0	0	logfile
✔	8XCN	38248	2024-08-03	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.34	0.01	1.610	14.34	3.28	4.2	95.8	0.0	0.32	1.16	0.74	0.83	2.28	8601	1089	5	0	6	0	0	logfile
✘	8XCG	38242	2024-08-09	2023-12-09	3.46	3.58	3.49	3.5	0.015	1.99	11.0	0.10	18.17	0.01	1.777	15.81	8.53	13.6	83.7	2.7	-3.83	0.79	0.89	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25941	3312	18	0	3	0	0	logfile
✔	8XCi	38244	2024-08-03	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.004	0.79	0.0	0.05	18.06	0.01	2.297	13.19	5.12	10.6	89.0	0.4	-2.00	0.49	0.50	0.75	1.78	8842	1143	3	0	0	0	0	logfile
✔	8XCM	38247	2024-08-03	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.61	0.00	1.803	11.43	3.95	4.8	95.2	0.0	0.41	0.48	0.74	0.83	2.43	8605	1089	5	0	6	0	0	logfile
✔	8XBX	38232	2024-08-02	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	5.2	0.007	0.89	0.0	0.05	20.09	0.01	2.284	35.93	0.00	4.5	95.5	0.0	-1.74	2.03	0.65	0.57	—	5873	663	5	38	0	0	0	logfile
✘	8XBT	38228	2024-08-09	2023-12-07	4.12	5.03	3.94	4.6	0.011	1.50	5.0	0.08	23.16	0.04	1.066	9.06	2.05	4.2	95.8	0.0	-1.25	0.87	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27776	2770	18	309	0	0	0	logfile
✔	8XC1	38236	2024-08-05	2023-12-07	2.21	2.60	2.41	2.6	0.004	1.19	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.003	0.65	0.0	0.04	21.09	0.00	2.297	6.36	2.22	3.3	96.7	0.0	1.04	1.58	0.62	0.80	3.31	13542	1320	12	120	22	0	0	logfile
✔	8XBW	38231	2024-08-02	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.27	0.0	0.06	23.55	0.00	2.473	27.75	2.48	3.4	96.6	0.0	-2.17	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8XBS	38227	2024-08-04	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.17	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.003	0.62	0.0	0.04	17.70	0.00	2.496	5.10	2.46	3.2	96.8	0.0	2.04	1.11	0.70	0.87	4.17	10658	1282	8	0	22	0	0	logfile
✔	8XBF	38216	2024-08-10	2023-12-06	3.6	3.79	2.41	2.0	0.004	0.63	0.0	0.04	13.65	0.00	2.057	16.51	5.28	6.3	93.7	0.0	-1.37	0.78	0.60	0.91	2.0	0.003	0.64	0.0	0.04	14.57	0.00	2.466	13.62	2.80	7.3	92.7	0.0	-1.25	0.53	0.84	0.68	1.14	30099	3833	10	0	18	0	0	logfile
✘	8XB4	38210	2024-08-02	2023-12-05	2.92	3.16	2.96	3.2	0.005	0.61	0.0	0.04	14.47	0.00	2.258	7.33	0.00	1.9	98.1	0.0	-1.88	0.61	0.81	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4307	536	2	0	1	0	0	logfile
✔	8XAU	38203	2024-08-09	2023-12-05	3.14	3.38	3.24	3.4	0.005	0.81	0.0	0.05	16.89	0.01	2.220	7.93	0.43	3.7	96.3	0.0	-2.40	0.74	0.82	2.14	3.4	0.004	0.62	0.0	0.05	17.14	0.00	2.479	10.29	3.44	3.7	96.1	0.2	-0.34	0.37	0.73	0.83	2.26	26640	3331	6	0	0	0	0	logfile
✔	8XAJ	38200	2024-08-04	2023-12-04	3.29	3.52	4.38	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.003	0.71	0.0	0.04	17.42	0.01	2.561	11.13	1.93	9.7	90.3	0.0	0.08	1.14	0.65	0.75	1.70	11668	1410	3	0	7	0	0	logfile
✔	8V7Z	43011	2024-08-03	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.005	0.66	0.0	0.04	19.28	0.00	1.920	10.18	6.18	5.8	94.1	0.1	-0.23	0.22	0.57	0.76	1.67	8977	1104	2	0	10	0	0	logfile
✔	8V81	43014	2024-08-04	2023-12-04	3.6	2.82	3.57	3.6	0.003	0.53	0.0	0.04	19.32	0.00	1.993	6.01	0.50	3.7	96.3	0.0	-0.73	0.63	0.79	1.20	3.6	0.003	0.52	0.0	0.04	18.96	0.00	1.992	5.16	5.84	2.9	97.1	0.0	-0.08	0.28	0.62	0.78	0.98	9258	1132	2	0	11	0	0	logfile
✘	8V7L	43003	2024-08-09	2023-12-04	2.9	3.39	2.93	3.1	0.010	1.36	0.0	0.08	21.51	0.01	2.316	1.99	2.32	3.6	96.2	0.3	-1.48	0.76	0.57	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25545	1203	12	280	2	0	10096	logfile
✔	8RBo	19033	2024-08-09	2023-12-04	3.02	4.07	3.43	3.8	0.003	0.56	0.0	0.04	17.24	0.00	2.081	9.33	0.07	2.2	97.8	0.0	0.49	0.60	0.44	0.47	3.7	0.006	0.89	1.0	0.05	17.74	0.01	1.788	14.97	1.82	3.0	97.0	0.0	0.23	1.35	0.87	0.82	1.69	26368	3290	15	0	6	0	0	logfile
✔	8RBM	19032	2024-08-04	2023-12-04	3.24	3.96	3.31	3.8	0.007	0.91	0.0	0.23	19.32	0.00	2.218	6.53	2.06	3.2	96.5	0.3	0.31	0.76	0.83	2.56	3.8	0.003	0.71	0.0	0.04	13.82	0.00	2.440	7.01	1.88	5.2	94.5	0.2	1.38	0.53	0.75	0.88	2.18	11259	1425	12	0	20	0	0	logfile
✔	8V85	43023	2024-08-02	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile

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