Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RBo	19033	2024-08-09	2023-12-04	3.02	4.07	3.43	3.8	0.003	0.56	0.0	0.04	17.24	0.00	2.081	9.33	0.07	2.2	97.8	0.0	0.49	0.60	0.44	0.47	3.7	0.006	0.89	1.0	0.05	17.74	0.01	1.788	14.97	1.82	3.0	97.0	0.0	0.23	1.35	0.87	0.82	1.69	26368	3290	15	0	6	0	0	logfile
✔	8RB8	19028	2024-08-05	2023-12-03	3.41	4.14	3.49	3.8	0.006	0.87	0.0	0.22	19.00	0.00	2.169	5.23	1.51	4.5	95.3	0.2	0.92	0.77	0.84	1.81	3.9	0.003	0.65	0.0	0.04	13.60	0.00	2.465	6.21	1.03	4.7	95.3	0.1	1.79	0.61	0.77	0.90	1.64	12585	1605	13	0	22	0	0	logfile
✔	8RB5	19026	2024-08-03	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.58	0.0	0.03	17.45	0.01	2.432	7.53	0.64	2.8	97.2	0.0	1.72	1.43	0.30	0.80	1.92	8772	540	3	0	0	0	4422	logfile
✔	8RB7	19027	2024-08-02	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.61	0.0	0.04	17.94	0.00	2.317	8.21	0.32	2.5	97.5	0.0	1.87	2.08	0.28	0.76	1.70	5848	360	2	0	0	0	2948	logfile
✔	8RB9	19029	2024-08-05	2023-12-03	3.19	3.83	3.27	3.6	0.007	0.94	0.0	0.22	20.53	0.00	2.148	5.77	1.99	5.0	94.9	0.1	0.54	0.79	0.85	2.38	3.6	0.003	0.63	0.0	0.04	14.07	0.00	2.440	5.69	1.51	4.7	95.2	0.1	1.54	1.02	0.77	0.90	1.95	12743	1605	13	0	26	0	0	logfile
✔	8RB4	19025	2024-08-05	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.003	0.62	0.0	0.04	17.29	0.00	2.385	8.07	2.05	2.4	97.5	0.1	1.44	2.23	0.48	0.79	1.38	14620	900	5	0	0	0	7370	logfile
✔	8V6o	42998	2024-08-08	2023-12-01	2.83	3.17	2.98	3.2	0.009	1.36	0.0	0.04	20.28	0.01	2.290	4.32	0.35	5.5	94.5	0.0	-6.54	0.61	0.74	3.73	3.1	0.002	0.64	0.0	0.04	18.64	0.00	2.479	7.88	1.23	5.4	94.6	0.0	0.92	1.11	0.67	0.85	3.16	22683	2560	12	0	43	44	0	logfile
✔	8V62	42987	2024-08-06	2023-12-01	3.4	2.29	3.50	2.1	0.002	0.56	0.0	0.04	10.43	0.01	2.363	2.06	0.00	0.9	99.1	0.0	0.61	0.75	0.77	3.19	2.1	0.003	0.58	0.0	0.04	14.41	0.00	2.495	4.87	1.77	1.7	98.3	0.0	0.90	0.46	0.76	0.78	2.74	15234	1980	9	0	0	0	0	logfile
✔	8V6L	42995	2024-08-08	2023-12-01	3.68	3.99	3.86	3.9	0.004	0.63	0.0	0.04	16.49	0.00	2.001	8.76	5.12	13.4	86.6	0.0	-1.18	0.68	0.82	2.42	4.0	0.003	0.77	0.0	0.04	17.88	0.00	2.334	8.21	4.65	11.2	88.7	0.0	-0.84	4.77	0.70	0.82	1.35	22387	2612	8	0	27	0	0	logfile
✔	8V6N	42997	2024-08-08	2023-12-01	2.59	2.81	2.72	2.9	0.008	1.22	0.0	0.05	16.90	0.01	2.274	3.79	0.00	5.6	94.4	0.0	-6.02	0.59	0.78	3.84	2.9	0.003	0.64	0.0	0.04	17.45	0.00	2.306	5.29	2.03	5.4	94.6	0.0	0.66	1.13	0.65	0.86	3.48	22185	2544	12	0	33	184	0	logfile
✔	8V5K	42983	2024-08-07	2023-11-30	2.6	2.12	2.76	1.9	0.007	0.75	0.0	0.05	11.79	0.01	2.217	3.64	0.00	1.2	98.8	0.0	0.72	0.79	0.79	4.83	1.9	0.003	0.63	0.0	0.04	15.28	0.00	2.517	5.66	1.66	1.4	98.6	0.0	1.49	0.42	0.80	0.82	3.57	15336	1980	12	0	3	0	0	logfile
✔	8R9W	19014	2024-08-09	2023-11-30	3.1	3.61	2.99	3.3	0.003	0.58	0.0	0.04	16.82	0.00	1.198	5.04	0.72	5.0	95.0	0.0	0.20	0.85	0.86	2.73	3.3	0.002	0.51	0.0	0.04	15.01	0.00	2.534	4.50	2.01	4.4	95.6	0.0	0.73	0.41	0.85	0.86	2.78	26331	3540	27	0	75	0	0	logfile
✔	8R9Z	19017	2024-08-03	2023-11-30	2.9	3.45	2.86	3.3	0.003	0.57	0.0	0.04	13.35	0.00	2.272	5.23	0.00	5.6	94.4	0.0	0.16	0.88	0.87	4.35	3.3	0.003	0.67	0.0	0.04	15.24	0.00	2.481	6.73	1.56	4.7	95.3	0.0	0.18	1.09	0.87	0.86	4.03	7441	972	7	0	3	0	0	logfile
✔	8R9X	19015	2024-08-02	2023-11-30	3.1	3.71	3.14	3.5	0.004	0.65	0.0	0.04	16.48	0.00	2.277	5.12	0.00	4.4	95.6	0.0	-0.47	0.72	0.88	3.81	3.5	0.003	0.66	0.0	0.04	14.63	0.00	2.481	5.12	1.75	3.7	96.3	0.0	0.06	0.54	0.65	0.86	3.87	3782	461	8	0	15	0	0	logfile
✔	8V54	42979	2024-08-06	2023-11-30	4.1	2.60	3.83	1.7	0.003	0.48	0.0	0.04	13.24	0.00	2.178	9.69	0.81	4.4	95.6	0.0	0.98	0.75	0.74	—	1.9	0.003	0.61	0.0	0.04	14.47	0.00	2.504	8.23	0.13	3.4	96.6	0.0	1.16	1.09	0.73	0.72	—	15728	1787	5	46	0	0	0	logfile
✘	8V5A	42981	2024-08-06	2023-11-30	3.0	2.17	3.05	2.0	0.009	1.05	0.0	0.06	13.03	0.01	2.106	6.89	0.00	3.7	96.3	0.0	-0.64	0.78	0.74	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13056	1701	6	0	0	0	0	logfile
✘	8V5R	42984	2024-08-06	2023-11-30	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15338	1743	6	43	1	0	0	logfile
✔	8R9Y	19016	2024-08-03	2023-11-30	3.0	3.63	3.03	3.5	0.003	0.59	0.0	0.04	13.51	0.00	2.255	6.05	0.00	5.1	94.9	0.0	0.13	0.84	0.83	3.66	3.5	0.004	0.65	0.0	0.05	15.59	0.00	2.489	7.00	2.63	5.1	94.9	0.0	0.13	2.03	0.86	0.85	3.57	7446	972	7	0	3	0	0	logfile
✔	8V5D	42982	2024-08-03	2023-11-30	3.0	3.76	3.05	3.6	0.003	0.52	0.0	0.04	9.90	0.00	2.219	12.09	1.84	4.1	95.9	0.0	0.80	0.69	0.61	1.04	3.6	0.004	0.88	0.0	0.05	14.86	0.01	2.451	17.08	1.84	5.5	94.4	0.1	-0.14	1.24	0.68	0.62	0.80	6694	851	1	0	0	0	0	logfile
✔	8V4Y	42977	2024-08-10	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.003	0.62	0.0	0.04	24.07	0.00	1.963	1.97	0.76	3.7	96.2	0.2	1.85	2.10	0.89	0.88	3.15	29426	1219	12	294	3	0	13550	logfile

• ← previous
• Page 23 of 530
• next →