Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V4M	42973	2024-08-06	2023-11-29	3.0	2.51	—	3.0	0.006	1.03	0.0	0.06	14.32	0.01	1.380	2.68	0.00	2.7	97.3	0.0	-1.91	0.65	0.79	2.78	2.0	0.003	0.68	0.0	0.04	17.03	0.00	1.874	8.18	2.18	2.7	97.3	0.0	0.56	1.48	0.72	0.85	3.23	17431	2227	11	0	13	0	0	logfile
✔	8R8R	19008	2024-08-05	2023-11-29	2.79	3.75	2.74	3.2	0.002	0.50	0.0	0.04	13.00	0.00	2.275	2.10	0.00	3.3	96.7	0.0	-0.27	0.89	0.88	5.08	3.2	0.004	0.60	0.0	0.04	14.07	0.00	2.475	2.52	0.15	3.6	96.4	0.0	-0.05	0.91	0.89	0.92	4.87	13089	1683	6	6	3	0	0	logfile
✔	8V4L	42972	2024-08-06	2023-11-29	2.9	2.46	—	2.0	0.006	1.05	0.0	0.06	14.22	0.01	1.385	2.32	0.05	2.4	97.6	0.0	-1.75	0.65	0.79	3.24	2.1	0.003	0.62	0.0	0.04	17.17	0.00	1.886	7.72	2.55	2.6	97.4	0.0	0.69	1.85	0.72	0.85	3.07	17463	2230	11	0	13	0	0	logfile
✔	8V4Y	42977	2024-08-10	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.003	0.62	0.0	0.04	24.07	0.00	1.963	1.97	0.76	3.7	96.2	0.2	1.85	2.10	0.89	0.88	3.15	29426	1219	12	294	3	0	13550	logfile
✔	8V4K	42971	2024-08-06	2023-11-29	3.1	2.75	—	2.9	0.006	1.03	0.0	0.06	14.27	0.01	1.337	2.27	0.05	2.4	97.6	0.0	-1.97	0.71	0.83	2.97	2.9	0.003	0.59	0.0	0.04	16.15	0.00	1.923	6.06	1.13	2.2	97.8	0.0	0.79	0.68	0.76	0.88	3.14	17559	2229	10	0	17	0	0	logfile
✘	8R8T	19009	2024-08-02	2023-11-29	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3256	418	2	0	1	0	0	logfile
✔	8R8K	19002	2024-08-02	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.002	0.46	0.0	0.04	15.42	0.00	2.633	4.06	2.50	3.5	96.5	0.0	-0.17	0.31	0.59	0.85	2.65	4005	515	3	0	0	0	0	logfile
✔	8V4F	42970	2024-08-02	2023-11-29	2.68	2.21	2.74	2.1	0.005	0.99	0.0	0.06	13.78	0.01	2.360	4.27	0.00	4.0	96.0	0.0	-0.42	0.76	0.78	3.91	2.0	0.006	0.65	0.0	0.05	16.46	0.01	2.594	6.48	3.74	5.0	95.0	0.0	-0.18	1.11	0.78	0.79	4.25	3237	412	3	0	0	0	0	logfile
✔	8V4Q	42975	2024-08-02	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.002	0.48	0.0	0.04	16.96	0.00	2.492	1.26	2.09	1.6	98.4	0.0	0.72	0.35	0.56	0.88	3.07	5993	761	3	0	0	0	0	logfile
✔	8R8D	18999	2024-08-03	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.004	0.67	0.0	0.05	14.98	0.01	2.506	7.04	2.75	4.4	95.6	0.0	0.16	1.13	0.67	0.82	2.94	7062	920	14	0	12	18	0	logfile
✔	8V4N	42974	2024-08-02	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.003	0.58	0.0	0.04	17.37	0.00	2.658	1.71	1.87	2.3	97.7	0.0	0.71	1.01	0.31	0.87	3.49	2067	263	1	0	0	0	0	logfile
✔	8V3L	42949	2024-08-04	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	3.0	0.003	0.65	0.0	0.04	13.22	0.00	2.389	10.54	0.16	3.1	96.7	0.1	1.08	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8X8Q	38156	2024-08-02	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.55	0.0	0.04	15.47	0.00	2.622	6.77	0.76	1.1	98.9	0.0	0.63	0.35	0.83	0.86	3.31	4949	622	3	0	1	0	0	logfile
✔	8V3S	42952	2024-08-02	2023-11-28	3.6	3.74	3.40	3.7	0.011	1.52	0.0	0.09	12.86	0.01	1.385	2.51	0.00	3.9	96.1	0.0	-1.14	0.72	0.75	3.31	3.7	0.003	0.62	0.0	0.04	14.89	0.00	2.070	5.68	2.73	2.4	97.4	0.2	0.43	1.38	0.78	0.81	3.23	3909	501	4	0	5	0	0	logfile
✔	8V46	42966	2024-08-06	2023-11-28	3.09	3.67	3.19	3.5	0.004	0.59	0.0	0.05	11.45	0.00	2.079	3.85	2.58	2.1	97.9	0.0	-0.32	0.78	0.81	2.75	3.5	0.004	0.57	0.0	0.04	13.39	0.00	1.983	6.90	1.46	1.9	98.1	0.0	1.61	0.68	0.79	0.85	2.33	15632	1937	7	0	3	0	0	logfile
✔	8V3R	42951	2024-08-02	2023-11-28	3.4	3.53	3.28	3.5	0.012	1.58	0.0	0.09	12.46	0.01	1.385	1.56	0.24	2.2	97.8	0.0	-0.46	0.66	0.75	4.33	3.5	0.004	0.63	0.0	0.04	15.35	0.00	1.970	7.54	2.43	2.6	97.4	0.0	0.53	1.38	0.79	0.85	3.82	3953	503	4	0	5	0	0	logfile
✘	8V48	42968	2024-08-09	2023-11-28	3.68	4.24	3.86	3.7	0.006	0.73	0.0	0.05	11.86	0.01	2.235	4.98	2.49	2.7	97.3	0.0	-0.34	0.81	0.70	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25334	3141	15	0	6	0	0	logfile
✔	8V45	42965	2024-08-07	2023-11-28	3.63	4.32	3.75	3.9	0.005	0.75	0.0	0.05	12.90	0.01	2.257	4.34	5.65	2.3	97.7	0.0	-1.11	0.84	0.78	1.39	3.9	0.003	0.65	0.0	0.04	14.29	0.00	2.510	8.72	1.88	2.1	97.9	0.0	1.73	1.55	0.85	0.81	1.09	19813	2485	12	0	4	0	0	logfile
✔	8V3Q	42950	2024-08-02	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	1.370	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.58	0.0	0.04	15.28	0.00	1.885	4.21	1.64	1.4	98.6	0.0	0.83	0.53	0.77	0.85	3.46	4030	503	4	0	9	0	0	logfile
✔	8V47	42967	2024-08-07	2023-11-28	4.08	4.63	4.12	4.1	0.006	0.79	0.0	0.05	12.06	0.01	2.275	5.49	2.85	2.3	97.7	0.0	-0.21	0.83	0.77	—	4.1	0.003	0.58	0.0	0.04	11.93	0.00	2.343	11.15	0.04	2.8	97.2	0.0	1.30	1.58	0.84	0.81	—	20580	2548	11	0	4	0	0	logfile

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