Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8V48	42968	2024-08-09	2023-11-28	3.68	4.24	3.86	3.7	0.006	0.73	0.0	0.05	11.86	0.01	2.235	4.98	2.49	2.7	97.3	0.0	-0.34	0.81	0.70	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25334	3141	15	0	6	0	0	logfile
✔	8X82	38133	2024-08-05	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.42	0.0	0.03	17.20	0.00	2.635	3.89	1.91	1.9	98.1	0.0	3.62	0.38	0.61	0.81	2.54	12004	1520	4	0	0	0	0	logfile
✔	8X83	38134	2024-08-08	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.003	0.45	0.0	0.03	15.83	0.00	2.503	3.95	0.61	1.9	98.1	0.0	3.54	0.52	0.58	0.79	2.80	24482	1520	12	0	6	4	12424	logfile
✔	8X84	38135	2024-08-08	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.003	0.45	0.0	0.03	15.30	0.00	2.484	3.86	0.91	1.5	98.5	0.0	3.46	0.48	0.60	0.81	3.04	24534	1524	12	0	6	4	12444	logfile
✔	8X8L	38148	2024-08-06	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.8	0.003	0.57	0.0	0.04	15.75	0.00	2.222	5.40	1.58	3.9	96.1	0.0	1.47	1.15	0.59	0.84	3.78	17555	1140	6	0	0	0	8704	logfile
✘	8X8N	38150	2024-08-06	2023-11-27	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17358	1133	7	0	2	0	8589	logfile
✔	8V2Z	42938	2024-08-05	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.002	0.59	0.0	0.04	14.83	0.00	2.120	3.58	1.21	2.9	97.1	0.0	1.91	1.54	0.75	0.88	2.55	14635	1860	10	0	10	0	0	logfile
✔	8X7T	38109	2024-08-10	2023-11-25	3.26	2.44	—	3.2	0.002	0.63	0.0	0.04	10.71	0.00	2.206	16.31	0.38	3.2	96.7	0.1	-3.29	0.78	0.69	1.97	3.2	0.006	0.70	0.0	0.04	14.15	0.00	2.471	10.58	1.39	3.6	96.3	0.0	-0.64	0.63	0.82	0.76	2.05	28329	3753	6	0	0	0	0	logfile
✔	8X7U	38111	2024-08-10	2023-11-25	3.57	3.00	—	3.5	0.003	0.66	0.0	0.04	11.87	0.00	2.050	11.43	0.31	2.5	97.4	0.1	-3.75	0.80	0.74	1.42	3.5	0.003	0.61	0.0	0.04	14.49	0.00	1.954	9.82	2.12	3.3	96.6	0.1	-0.62	1.15	0.81	0.75	1.67	28832	3840	11	0	8	0	0	logfile
✔	8V30	42939	2024-08-06	2023-11-25	2.54	3.42	2.59	3.1	0.008	0.94	10.0	0.05	14.97	0.01	1.468	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.1	0.005	0.66	0.0	0.05	14.24	0.00	1.908	4.20	0.57	3.6	96.4	0.0	1.45	0.26	0.75	0.89	3.89	14910	1890	20	0	15	0	0	logfile
✔	8R7H	18973	2024-08-05	2023-11-24	3.29	3.67	3.28	3.5	0.004	0.50	0.0	0.04	9.96	0.01	2.262	6.08	0.86	2.1	97.9	0.0	-1.80	0.90	0.85	2.72	3.2	0.003	0.59	0.0	0.04	13.04	0.00	2.485	5.73	1.59	3.0	97.0	0.0	1.12	0.57	0.91	0.89	2.69	14258	1850	4	0	0	0	0	logfile
✔	8V2o	42918	2024-08-05	2023-11-23	2.45	3.28	2.53	3.0	0.004	0.80	0.0	0.05	15.84	0.01	2.253	3.92	0.70	2.8	97.2	0.0	-1.34	0.76	0.89	3.74	3.0	0.002	0.59	0.0	0.04	14.42	0.00	2.029	4.64	0.76	3.1	96.9	0.0	1.72	0.28	0.74	0.88	3.87	14660	1860	10	0	10	0	0	logfile
✔	8R6U	18963	2024-08-05	2023-11-23	2.98	2.77	3.03	3.0	0.007	0.73	0.0	0.05	17.13	0.01	1.964	4.89	6.46	6.6	93.4	0.0	-1.04	0.74	0.87	3.08	3.0	0.003	0.58	0.0	0.04	17.48	0.00	2.041	5.46	2.25	4.9	95.1	0.0	-0.03	0.91	0.73	0.85	2.27	13408	1566	6	43	1	0	0	logfile
✔	8X7A	38096	2024-08-06	2023-11-23	2.56	3.58	2.64	3.3	0.019	0.99	2.0	0.04	8.42	0.01	2.199	4.74	0.12	2.1	97.9	0.0	-0.63	0.67	0.71	2.35	3.3	0.003	0.65	0.0	0.04	14.57	0.00	2.353	6.53	2.23	3.0	97.0	0.0	1.24	1.25	0.65	0.80	2.57	15628	1044	6	0	1	0	7679	logfile
✔	8X6F	38087	2024-08-09	2023-11-21	3.7	3.32	3.73	3.6	0.005	0.69	1.0	0.05	17.83	0.00	2.210	9.63	0.69	2.2	97.8	0.0	0.99	0.59	0.67	1.19	3.5	0.004	0.61	0.0	0.04	19.41	0.00	2.441	9.48	3.41	3.1	96.9	0.0	0.47	1.39	0.65	0.74	1.16	26982	3175	9	91	0	0	0	logfile
✔	8X6G	38088	2024-08-09	2023-11-21	3.3	2.85	3.25	3.2	0.004	0.60	0.0	0.04	16.82	0.00	2.200	8.79	0.25	1.7	98.3	0.1	1.36	0.55	0.69	2.21	3.2	0.004	0.59	0.0	0.04	18.62	0.00	2.496	7.95	2.52	2.5	97.5	0.0	1.02	0.62	0.66	0.79	2.26	27271	3232	10	81	0	0	0	logfile
✔	8V24	42897	2024-08-07	2023-11-21	3.6	3.75	3.54	3.8	0.004	0.63	1.0	0.04	20.51	0.00	1.879	8.74	0.48	5.7	94.1	0.2	0.06	0.62	0.77	2.14	3.8	0.003	0.50	0.0	0.04	17.77	0.00	1.903	8.04	1.62	5.3	94.5	0.2	0.23	0.34	0.64	0.78	1.98	19652	1253	8	0	8	0	9601	logfile
✔	8X5X	38074	2024-08-02	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.78	0.0	0.04	17.52	0.00	2.610	12.40	4.74	4.5	95.5	0.0	0.94	1.34	0.44	0.57	0.65	2105	256	1	0	0	0	0	logfile
✔	8X5Y	38075	2024-08-02	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.004	0.80	0.0	0.04	16.86	0.01	2.588	9.07	2.81	6.7	93.3	0.0	-0.34	0.31	0.33	0.54	1.31	2292	274	2	0	1	0	0	logfile
✔	8X61	38077	2024-08-02	2023-11-20	3.05	3.26	3.01	3.3	0.004	0.60	0.0	0.04	16.00	0.00	2.218	5.90	0.34	3.2	96.8	0.0	0.61	0.69	0.80	2.83	3.3	0.003	0.56	0.0	0.04	16.31	0.00	2.568	4.86	2.57	2.7	97.3	0.0	2.03	1.25	0.66	0.81	2.67	5737	756	6	0	2	0	0	logfile

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