Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X5Y	38075	2024-08-02	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.004	0.80	0.0	0.04	16.86	0.01	2.588	9.07	2.81	6.7	93.3	0.0	-0.34	0.31	0.33	0.54	1.31	2292	274	2	0	1	0	0	logfile
✘	8X64	38079	2024-08-02	2023-11-20	3.4	4.16	3.79	4.1	0.006	0.79	1.0	0.05	14.11	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2189	263	2	0	1	0	0	logfile
✔	8X5D	38066	2024-08-07	2023-11-17	3.1	3.23	3.05	3.2	0.004	0.65	0.0	0.04	15.44	0.01	2.263	3.62	5.46	4.0	96.0	0.0	-5.02	0.78	0.87	3.03	3.2	0.003	0.60	0.0	0.04	16.55	0.00	2.512	4.59	3.37	4.4	95.6	0.0	-0.97	0.47	0.80	0.89	2.20	18477	2225	13	47	0	0	0	logfile
✔	8V0o	42863	2024-08-09	2023-11-17	3.3	3.45	3.42	3.5	0.005	0.77	1.0	0.06	14.09	0.01	2.264	2.93	0.00	4.7	95.3	0.1	-1.71	0.69	0.81	3.21	3.5	0.003	0.56	0.0	0.04	14.92	0.00	2.484	3.70	1.45	4.5	95.5	0.0	-0.22	0.33	0.70	0.84	2.90	24879	3105	15	0	48	0	0	logfile
✔	8V0X	42873	2024-08-09	2023-11-17	3.3	3.51	3.34	3.5	0.004	0.79	0.0	0.05	14.55	0.01	2.304	3.00	0.00	5.8	94.2	0.0	-1.76	0.67	0.77	2.58	3.5	0.003	0.57	0.0	0.04	15.39	0.00	2.485	5.08	1.55	3.7	96.3	0.0	-0.43	0.40	0.70	0.82	2.41	24796	3123	6	0	29	0	0	logfile
✔	8V0L	42860	2024-08-09	2023-11-17	3.0	3.23	3.06	3.2	0.004	0.77	0.0	0.05	14.19	0.01	2.299	2.62	0.00	4.9	95.1	0.0	-1.01	0.67	0.81	2.68	3.3	0.004	0.59	0.0	0.05	15.24	0.00	2.419	3.99	2.00	5.1	94.9	0.0	0.00	1.13	0.69	0.84	2.86	24849	3105	15	0	45	0	0	logfile
✔	8V0W	42872	2024-08-09	2023-11-17	3.3	3.47	3.29	3.5	0.005	0.87	0.0	0.06	14.32	0.01	2.236	3.46	0.00	7.8	92.2	0.0	-1.92	0.62	0.76	2.31	3.5	0.003	0.58	0.0	0.04	15.17	0.00	2.465	5.43	1.29	6.2	93.8	0.0	-0.63	0.35	0.74	0.84	2.12	24964	3123	12	0	41	0	0	logfile
✔	8V0S	42868	2024-08-09	2023-11-17	3.3	3.50	3.36	3.5	0.005	0.88	0.0	0.06	14.64	0.01	2.264	4.97	0.00	9.4	90.5	0.1	-3.00	0.66	0.70	1.67	3.5	0.003	0.62	0.0	0.05	15.72	0.00	2.384	8.23	2.24	8.1	91.9	0.0	-2.06	0.40	0.68	0.74	1.47	24950	3126	12	0	37	0	0	logfile
✔	8V0Q	42866	2024-08-09	2023-11-17	3.9	4.16	3.93	4.1	0.004	0.82	0.0	0.06	14.49	0.01	2.279	3.47	0.00	4.7	95.3	0.0	-1.79	0.78	0.79	1.36	4.1	0.005	0.68	0.0	0.05	15.34	0.00	2.483	7.53	1.60	6.0	93.9	0.0	-0.64	0.44	0.79	0.81	1.22	24795	3105	12	0	42	0	0	logfile
✔	8X5F	38068	2024-08-04	2023-11-17	2.96	3.36	3.21	3.4	0.011	1.27	3.0	0.06	17.30	0.01	2.149	10.50	0.67	3.8	96.1	0.2	1.88	0.65	0.81	3.28	3.4	0.003	0.55	0.0	0.04	17.01	0.00	2.359	3.45	1.54	2.1	97.7	0.2	3.04	1.83	0.59	0.84	2.86	10843	1232	6	0	42	4	0	logfile
✔	8V0P	42864	2024-08-09	2023-11-17	3.3	3.60	3.41	3.6	0.005	0.79	0.0	0.06	14.49	0.01	2.294	3.21	0.00	5.0	95.0	0.0	-1.57	0.70	0.78	2.54	3.6	0.002	0.54	0.0	0.04	15.16	0.00	2.422	4.69	1.44	4.3	95.7	0.0	-0.10	0.37	0.73	0.83	2.12	24925	3111	15	0	47	0	0	logfile
✔	8X5R	38073	2024-08-09	2023-11-17	3.72	4.01	3.78	3.8	0.006	0.85	0.0	0.06	20.78	0.01	2.203	17.05	1.06	9.2	90.3	0.5	-1.84	0.82	0.79	1.42	3.8	0.004	0.80	1.0	0.05	16.64	0.00	1.944	12.13	2.66	7.9	92.0	0.1	-1.51	1.13	0.83	0.80	1.38	26208	3258	27	0	63	0	0	logfile
✔	8X5Q	38072	2024-08-09	2023-11-17	3.47	3.68	3.46	3.6	0.006	0.80	0.0	0.05	20.55	0.01	2.198	14.63	1.21	9.2	90.4	0.4	-1.75	0.79	0.81	1.75	3.6	0.004	0.79	1.0	0.05	16.25	0.00	2.290	11.42	3.16	8.7	91.2	0.0	-1.49	0.56	0.80	0.83	1.85	26208	3258	27	0	63	0	0	logfile
✔	8V0N	42862	2024-08-09	2023-11-17	3.4	3.60	3.40	3.6	0.004	0.77	0.0	0.06	14.36	0.01	2.286	2.85	0.00	5.5	94.5	0.0	-1.17	0.69	0.80	2.19	3.6	0.003	0.56	0.0	0.04	15.10	0.00	2.462	3.93	1.90	4.9	95.1	0.0	-0.16	0.34	0.69	0.81	1.97	24690	3084	15	0	45	0	0	logfile
✔	8X5i	38070	2024-08-06	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.004	0.81	1.0	0.05	16.15	0.00	2.033	4.90	1.75	4.3	95.7	0.0	0.26	0.53	0.75	0.88	3.16	17006	2063	8	0	8	0	0	logfile
✔	8V0T	42869	2024-08-09	2023-11-17	3.1	3.35	3.20	3.4	0.006	0.82	1.0	0.06	14.43	0.01	2.310	3.20	0.04	5.8	94.1	0.0	-1.84	0.68	0.80	2.32	3.4	0.003	0.56	0.0	0.04	15.28	0.00	2.496	5.39	1.22	4.7	95.2	0.0	-0.39	1.15	0.69	0.83	2.18	24777	3123	6	0	27	0	0	logfile
✔	8V0U	42870	2024-08-09	2023-11-17	3.3	3.50	3.28	3.5	0.005	0.76	0.0	0.05	14.48	0.01	2.280	3.18	0.00	4.7	95.2	0.0	-1.64	0.69	0.79	2.64	3.5	0.004	0.56	0.0	0.04	15.30	0.00	2.504	3.96	1.11	4.5	95.5	0.0	-0.39	0.33	0.75	0.85	2.70	24811	3105	12	0	39	0	0	logfile
✔	8X5E	38067	2024-08-02	2023-11-17	3.61	3.77	3.58	3.7	0.007	1.27	1.0	0.07	14.32	0.00	2.438	11.64	2.53	7.8	92.2	0.0	-1.30	0.51	0.81	2.40	3.7	0.003	0.62	0.0	0.04	15.65	0.00	2.406	5.50	6.01	5.2	94.8	0.0	1.42	1.42	0.51	0.81	2.38	3216	390	2	0	8	0	0	logfile
✔	8V0R	42867	2024-08-09	2023-11-17	3.0	3.22	3.18	3.3	0.004	0.74	0.0	0.05	13.57	0.01	2.244	2.74	0.00	4.3	95.7	0.1	-1.40	0.72	0.83	3.15	3.3	0.003	0.55	0.0	0.04	15.03	0.00	2.398	4.41	1.10	3.5	96.5	0.1	0.13	1.15	0.72	0.85	2.93	24903	3123	9	0	36	0	0	logfile
✔	8V0M	42861	2024-08-09	2023-11-17	3.2	3.44	3.28	3.5	0.007	0.93	0.0	0.05	14.11	0.01	1.974	3.26	0.00	5.3	94.7	0.0	-1.63	0.66	0.78	2.37	3.5	0.004	0.57	0.0	0.05	14.90	0.00	2.429	4.17	1.26	4.9	95.1	0.0	-0.65	0.39	0.66	0.80	2.23	24835	3105	15	0	44	0	0	logfile

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