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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8V0U | 42870 | 2024-08-09 | 2023-11-17 | 3.3 | 3.50 | 3.28 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 14.48 | 0.01 | 2.280 | 3.18 | 0.00 | 4.7 | 95.2 | 0.0 | -1.64 | 0.69 | 0.79 | 2.64 | 3.5 | 0.004 | 0.56 | 0.0 | 0.04 | 15.30 | 0.00 | 2.504 | 3.96 | 1.11 | 4.5 | 95.5 | 0.0 | -0.39 | 0.33 | 0.75 | 0.85 | 2.70 | 24811 | 3105 | 12 | 0 | 39 | 0 | 0 | logfile |
✔ | 8X55 | 38063 | 2024-08-09 | 2023-11-16 | 3.75 | 4.07 | 3.87 | 3.9 | 0.005 | 0.82 | 0.0 | 0.06 | 20.86 | 0.01 | 2.075 | 13.49 | 0.40 | 7.4 | 92.5 | 0.1 | -1.54 | 0.80 | 0.80 | 1.47 | 3.9 | 0.005 | 0.71 | 0.0 | 0.05 | 16.70 | 0.00 | 2.381 | 10.00 | 3.96 | 7.8 | 92.1 | 0.1 | -1.06 | 1.19 | 0.81 | 0.82 | 1.57 | 25749 | 3189 | 21 | 0 | 60 | 0 | 0 | logfile |
✘ | 8R57 | 18903 | 2024-08-09 | 2023-11-16 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25048 | 1878 | 29 | 458 | 28 | 357 | 0 | logfile |
✔ | 8X51 | 38058 | 2024-08-03 | 2023-11-16 | 2.92 | 3.16 | 2.94 | 3.2 | 0.008 | 1.27 | 0.0 | 0.07 | 18.47 | 0.01 | 2.328 | 1.89 | 0.00 | 7.3 | 92.3 | 0.3 | -3.65 | 0.56 | 0.76 | 3.45 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 20.56 | 0.00 | 2.336 | 5.72 | 3.07 | 6.2 | 93.5 | 0.3 | -0.69 | 1.34 | 0.61 | 0.80 | 2.69 | 8095 | 885 | 6 | 42 | 2 | 0 | 0 | logfile |
✔ | 8UZW | 42845 | 2024-08-10 | 2023-11-16 | 2.69 | 3.11 | 2.90 | 3.1 | 0.012 | 0.86 | 0.0 | 0.04 | 15.67 | 0.01 | 2.141 | 9.07 | 0.71 | 2.8 | 97.2 | 0.0 | 0.78 | 0.65 | 0.81 | 2.60 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.29 | 0.00 | 2.345 | 8.30 | 1.51 | 2.1 | 97.9 | 0.0 | 0.84 | 0.28 | 0.60 | 0.78 | 2.40 | 28258 | 3713 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X5B | 38065 | 2024-08-03 | 2023-11-16 | 2.84 | 3.12 | 2.88 | 3.1 | 0.014 | 1.74 | 10.0 | 0.11 | 18.03 | 0.02 | 2.248 | 11.12 | 1.65 | 4.1 | 95.8 | 0.1 | -1.37 | 0.64 | 0.84 | 3.27 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 16.42 | 0.00 | 2.430 | 2.92 | 1.35 | 2.2 | 97.8 | 0.0 | 2.45 | 0.98 | 0.62 | 0.84 | 2.95 | 6973 | 786 | 6 | 0 | 28 | 14 | 0 | logfile |
✔ | 8X50 | 38057 | 2024-08-09 | 2023-11-16 | 3.82 | 4.35 | 4.09 | 4.0 | 0.004 | 0.81 | 0.0 | 0.06 | 21.38 | 0.01 | 2.087 | 15.86 | 0.32 | 7.9 | 92.0 | 0.1 | -1.40 | 0.82 | 0.80 | 1.09 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.56 | 0.00 | 2.437 | 11.21 | 3.13 | 8.3 | 91.7 | 0.1 | -1.09 | 1.25 | 0.83 | 0.83 | 1.44 | 25828 | 3192 | 23 | 0 | 65 | 0 | 0 | logfile |
✔ | 8X56 | 38064 | 2024-08-09 | 2023-11-16 | 3.93 | 4.27 | 4.00 | 4.1 | 0.004 | 0.81 | 0.0 | 0.06 | 21.40 | 0.01 | 2.064 | 15.93 | 0.58 | 7.0 | 92.8 | 0.2 | -1.65 | 0.83 | 0.80 | 0.99 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 16.64 | 0.00 | 2.319 | 10.37 | 3.17 | 7.2 | 92.7 | 0.1 | -1.26 | 1.16 | 0.84 | 0.81 | 1.05 | 25749 | 3189 | 21 | 0 | 60 | 0 | 0 | logfile |
✘ | 8X4Z | 38056 | 2024-08-09 | 2023-11-16 | 3.49 | 3.81 | 3.57 | 3.8 | 0.005 | 0.82 | 0.0 | 0.06 | 21.37 | 0.01 | 2.094 | 12.13 | 0.50 | 7.7 | 92.3 | 0.1 | -1.62 | 0.78 | 0.82 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25839 | 3192 | 24 | 0 | 66 | 0 | 0 | logfile |
✔ | 8X54 | 38061 | 2024-08-04 | 2023-11-16 | 2.9 | 3.26 | 3.00 | 3.2 | 0.010 | 1.15 | 6.0 | 0.07 | 14.62 | 0.01 | 1.597 | 6.23 | 1.05 | 4.6 | 95.4 | 0.0 | -3.47 | 0.40 | 0.59 | 2.75 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.49 | 0.00 | 2.407 | 4.65 | 2.01 | 2.7 | 97.2 | 0.1 | 0.94 | 1.28 | 0.61 | 0.82 | 2.69 | 11009 | 1337 | 14 | 0 | 27 | 0 | 0 | logfile |
✔ | 8X53 | 38060 | 2024-08-04 | 2023-11-16 | 3.0 | 3.15 | 2.99 | 3.2 | 0.010 | 1.21 | 12.0 | 0.08 | 14.53 | 0.01 | 1.597 | 5.63 | 0.53 | 4.8 | 95.1 | 0.1 | -3.49 | 0.35 | 0.54 | 2.55 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 14.40 | 0.00 | 2.382 | 6.36 | 2.46 | 3.1 | 96.8 | 0.1 | 0.85 | 0.58 | 0.60 | 0.80 | 2.39 | 10947 | 1334 | 14 | 0 | 26 | 0 | 0 | logfile |
✔ | 8X52 | 38059 | 2024-08-04 | 2023-11-16 | 2.9 | 3.11 | 2.86 | 3.3 | 0.009 | 1.13 | 7.0 | 0.07 | 14.34 | 0.01 | 1.598 | 7.57 | 0.88 | 4.7 | 95.2 | 0.2 | -3.49 | 0.49 | 0.63 | 2.82 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 14.80 | 0.00 | 2.422 | 6.94 | 2.10 | 2.9 | 97.0 | 0.1 | 0.80 | 0.78 | 0.66 | 0.83 | 2.78 | 10907 | 1334 | 14 | 0 | 25 | 0 | 0 | logfile |
✔ | 8R50 | 18889 | 2024-08-10 | 2023-11-15 | 3.1 | 3.35 | 3.19 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 17.30 | 0.00 | 2.186 | 9.71 | 0.16 | 8.0 | 92.0 | 0.1 | -1.17 | 0.82 | 0.83 | 2.96 | 3.2 | 0.003 | 0.63 | 0.0 | 0.05 | 17.00 | 0.00 | 2.352 | 8.42 | 4.66 | 7.3 | 92.6 | 0.1 | -1.14 | 0.35 | 0.83 | 0.86 | 3.09 | 29752 | 3778 | 12 | 0 | 32 | 0 | 0 | logfile |
✔ | 8X43 | 38041 | 2024-08-10 | 2023-11-15 | 3.0 | 3.27 | 3.12 | 3.3 | 0.005 | 0.56 | 0.0 | 0.03 | 17.00 | 0.00 | 1.965 | 12.43 | 0.38 | 3.8 | 96.2 | 0.0 | 2.23 | 0.54 | 0.70 | 2.13 | 3.2 | 0.004 | 0.78 | 0.0 | 0.03 | 17.67 | 0.00 | 2.426 | 9.55 | 1.96 | 3.5 | 96.5 | 0.0 | 2.61 | 0.82 | 0.60 | 0.76 | 2.11 | 30164 | 1880 | 12 | 0 | 4 | 0 | 14984 | logfile |
✔ | 8R54 | 18891 | 2024-08-06 | 2023-11-15 | 3.5 | 3.54 | 3.52 | 3.5 | 0.006 | 0.65 | 1.0 | 0.05 | 18.75 | 0.00 | 2.176 | 9.13 | 0.35 | 8.8 | 91.2 | 0.1 | -1.09 | 0.83 | 0.85 | 2.67 | 3.5 | 0.005 | 0.82 | 1.0 | 0.05 | 17.17 | 0.00 | 2.454 | 7.40 | 2.89 | 7.0 | 93.0 | 0.0 | -0.77 | 0.23 | 0.82 | 0.85 | 2.50 | 15900 | 1982 | 11 | 0 | 24 | 0 | 0 | logfile |
✔ | 8R51 | 18890 | 2024-08-05 | 2023-11-15 | 3.2 | 3.29 | 3.12 | 3.3 | 0.004 | 0.52 | 0.0 | 0.05 | 16.46 | 0.00 | 2.103 | 6.56 | 0.57 | 5.9 | 94.1 | 0.0 | -0.39 | 0.77 | 0.88 | 3.90 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.59 | 0.00 | 2.346 | 5.94 | 3.53 | 4.9 | 95.1 | 0.0 | -0.53 | 0.26 | 0.78 | 0.90 | 3.57 | 13978 | 1793 | 6 | 0 | 13 | 0 | 0 | logfile |
✔ | 8X4H | 38049 | 2024-08-09 | 2023-11-15 | 3.65 | 4.00 | 3.78 | 3.8 | 0.006 | 0.85 | 0.0 | 0.06 | 20.99 | 0.00 | 2.078 | 16.16 | 0.68 | 8.7 | 91.2 | 0.1 | -1.87 | 0.80 | 0.80 | 2.11 | 3.8 | 0.003 | 0.68 | 0.0 | 0.05 | 16.02 | 0.00 | 2.440 | 10.56 | 2.52 | 7.1 | 92.9 | 0.0 | -1.36 | 0.54 | 0.81 | 0.80 | 1.80 | 25824 | 3189 | 24 | 0 | 66 | 0 | 0 | logfile |
✔ | 8UZB | 42838 | 2024-08-04 | 2023-11-14 | 2.63 | 2.93 | 2.72 | 2.9 | 0.003 | 0.53 | 0.0 | 0.04 | 20.26 | 0.00 | 2.147 | 5.73 | 0.00 | 3.7 | 96.3 | 0.0 | 0.49 | 0.67 | 0.78 | 2.83 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 21.22 | 0.00 | 2.463 | 5.14 | 1.48 | 3.4 | 96.6 | 0.0 | 0.99 | 0.34 | 0.68 | 0.81 | 2.39 | 10882 | 910 | 4 | 162 | 0 | 0 | 0 | logfile |
✔ | 8UZA | 42837 | 2024-08-04 | 2023-11-14 | 3.17 | 3.37 | 3.20 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 21.34 | 0.00 | 2.122 | 7.07 | 0.25 | 4.8 | 95.2 | 0.0 | -0.15 | 0.77 | 0.84 | 2.56 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 21.41 | 0.00 | 2.268 | 5.17 | 1.97 | 5.0 | 95.0 | 0.0 | 0.13 | 0.23 | 0.77 | 0.84 | 2.04 | 11072 | 910 | 4 | 171 | 0 | 0 | 0 | logfile |
✔ | 8R4B | 18884 | 2024-08-03 | 2023-11-13 | 3.88 | 2.61 | — | 2.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.62 | 0.00 | 2.206 | 12.29 | 0.52 | 9.5 | 90.2 | 0.3 | -2.78 | 0.76 | 0.69 | 1.44 | 2.9 | 0.005 | 0.80 | 0.0 | 0.05 | 17.28 | 0.00 | 2.399 | 13.85 | 4.31 | 9.7 | 90.0 | 0.3 | -2.60 | 1.58 | 0.77 | 0.72 | 1.48 | 7600 | 1031 | 4 | 0 | 1 | 0 | 0 | logfile |