Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R4B	18884	2024-08-03	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.005	0.80	0.0	0.05	17.28	0.00	2.399	13.85	4.31	9.7	90.0	0.3	-2.60	1.58	0.77	0.72	1.48	7600	1031	4	0	1	0	0	logfile
✔	8R4D	18886	2024-08-02	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8UYH	42806	2024-08-02	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.003	0.51	0.0	0.04	15.80	0.00	1.945	5.48	2.73	2.1	97.9	0.0	1.51	1.25	0.60	0.82	2.16	6036	745	4	0	5	0	0	logfile
✔	8UYF	42804	2024-08-03	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8R47	18881	2024-08-02	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.468	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.69	0.0	0.04	16.32	0.00	2.616	7.34	1.77	4.4	95.6	0.0	-3.86	1.04	0.52	0.83	6.07	3780	498	6	0	0	0	0	logfile
✔	8R4C	18885	2024-08-02	2023-11-13	3.55	2.98	3.52	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.004	0.74	0.0	0.04	18.39	0.01	2.521	10.85	6.74	10.4	89.6	0.0	-2.84	0.23	0.63	0.76	1.71	4027	553	2	0	0	0	0	logfile
✔	8R3T	18874	2024-08-02	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.007	1.45	0.0	0.06	14.10	0.00	2.514	4.42	3.21	7.0	93.0	0.0	-3.10	1.75	0.38	0.76	5.01	5438	354	6	0	0	0	2804	logfile
✔	8R3Z	18878	2024-08-03	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.002	0.56	0.0	0.04	17.72	0.00	2.034	11.54	2.71	2.3	97.7	0.0	0.47	0.51	0.82	0.77	1.68	6389	755	3	6	1	0	0	logfile
✘	8X2H	38010	2024-08-07	2023-11-09	2.9	3.07	2.88	3.0	0.005	0.85	1.0	0.05	20.16	0.00	2.037	16.30	13.38	8.7	91.1	0.2	-4.22	0.60	0.58	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19088	2363	2	0	1	0	0	logfile
✔	8X2K	38015	2024-08-03	2023-11-09	3.03	3.27	3.09	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.003	0.89	0.0	0.04	15.60	0.00	1.608	3.71	1.53	2.7	97.3	0.0	0.64	0.36	0.67	0.82	2.36	8570	1111	6	0	1	2	0	logfile
✔	8R3K	18871	2024-08-05	2023-11-09	3.43	3.17	3.32	3.3	0.003	0.54	0.0	0.04	18.62	0.00	1.888	7.20	0.00	2.4	97.6	0.0	1.23	0.77	0.86	2.39	3.3	0.005	0.98	2.0	0.04	18.95	0.00	1.947	7.95	2.67	2.9	97.1	0.0	1.12	0.94	0.77	0.86	2.06	14767	1717	7	41	3	0	0	logfile
✔	8X2i	38011	2024-08-07	2023-11-09	2.5	2.63	2.53	2.7	0.009	0.93	0.0	0.06	19.08	0.01	1.057	14.15	8.96	5.6	94.2	0.2	-2.37	0.62	0.67	2.62	2.6	0.004	0.66	0.0	0.05	18.88	0.00	2.385	6.93	2.87	3.9	96.1	0.0	0.02	0.58	0.61	0.65	2.41	18645	2303	2	0	1	0	0	logfile
✘	8X2L	38016	2024-08-03	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7099	885	6	0	9	1	0	logfile
✔	8R3G	18864	2024-08-05	2023-11-09	4.4	4.64	4.35	4.4	0.013	1.54	0.0	0.10	19.04	0.01	2.243	11.87	0.18	1.7	98.3	0.0	-1.19	0.73	0.52	—	4.3	0.003	0.68	0.0	0.04	18.38	0.00	2.402	14.92	0.00	2.3	97.7	0.0	0.63	1.53	0.86	0.77	—	11985	1340	6	82	0	0	0	logfile
✘	8R34	18860	2024-08-03	2023-11-08	2.62	2.82	2.62	2.9	0.004	0.65	0.0	0.04	19.66	0.00	2.167	7.50	2.41	2.3	97.7	0.0	0.34	0.62	0.83	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7762	970	6	0	14	62	0	logfile
✔	8R33	18859	2024-08-03	2023-11-08	2.29	2.45	2.30	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.003	0.59	0.0	0.04	17.47	0.00	2.573	6.41	1.01	2.0	98.0	0.0	2.35	0.25	0.66	0.86	4.50	8066	978	6	0	8	328	0	logfile
✔	8UX1	42685	2024-08-06	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.004	0.59	0.0	0.04	26.25	0.00	2.588	4.97	1.63	2.3	97.6	0.1	1.49	1.07	0.86	0.86	3.61	16395	1332	12	291	0	0	0	logfile
✔	8R35	18861	2024-08-03	2023-11-08	3.12	3.46	3.18	3.4	0.003	0.55	0.0	0.04	16.59	0.00	2.214	6.87	0.90	2.4	97.6	0.0	1.44	0.68	0.87	1.80	3.4	0.002	0.56	0.0	0.04	16.74	0.00	2.567	6.32	2.71	2.5	97.5	0.0	2.40	0.27	0.67	0.86	1.61	7150	953	2	0	0	0	0	logfile
✔	8UWS	42680	2024-08-06	2023-11-08	2.65	2.19	2.70	2.1	0.005	0.73	0.0	0.05	16.68	0.01	1.576	6.62	2.74	4.5	95.2	0.3	-0.72	0.82	0.83	4.68	2.0	0.006	0.70	0.0	0.05	17.39	0.01	2.163	5.87	4.39	4.5	95.3	0.2	-0.24	1.01	0.82	0.83	4.54	17137	2133	8	0	4	0	0	logfile
✔	8X1N	37997	2024-08-02	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.003	0.53	0.0	0.04	16.19	0.00	2.580	3.16	2.52	3.2	96.8	0.0	2.36	0.35	0.66	0.82	1.27	4763	591	3	0	8	0	0	logfile

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