Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QX9	18715	2024-08-02	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.94	0.0	0.04	20.07	0.00	2.515	16.92	3.16	2.5	97.5	0.0	-4.81	2.17	0.48	0.75	4.07	3696	540	12	0	0	0	0	logfile
✔	8QXK	18730	2024-08-06	2023-10-24	2.66	2.75	2.70	2.7	0.003	0.74	0.0	0.05	17.51	0.00	1.965	3.56	0.00	2.4	97.6	0.0	-0.20	0.76	0.81	4.69	2.7	0.003	0.61	0.0	0.04	17.73	0.00	1.953	3.47	2.04	2.2	97.7	0.1	0.67	0.36	0.75	0.85	4.20	15323	1832	8	0	28	0	0	logfile
✔	8QXo	18734	2024-08-05	2023-10-24	3.43	3.56	3.52	3.5	0.003	0.63	0.0	0.04	16.43	0.01	1.759	4.94	0.13	3.0	96.9	0.1	0.60	0.64	0.70	1.63	3.5	0.003	0.60	0.0	0.04	17.81	0.00	1.896	4.62	2.43	4.8	95.2	0.0	0.77	0.88	0.77	0.82	1.94	14291	1747	8	0	14	0	0	logfile
✔	8QXB	18717	2024-08-02	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.3	0.003	0.84	0.0	0.04	18.31	0.00	2.549	7.74	4.98	2.7	97.3	0.0	-4.60	3.45	0.52	0.76	1.89	5544	810	18	0	0	0	0	logfile
✔	8QXA	18716	2024-08-02	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.004	0.84	0.0	0.04	14.32	0.00	2.541	15.94	0.00	8.5	91.5	0.0	-4.42	1.43	0.44	0.70	—	3696	540	12	0	0	0	0	logfile
✔	8QXM	18732	2024-08-05	2023-10-24	2.94	3.04	3.00	3.0	0.003	0.63	0.0	0.04	17.60	0.01	1.812	2.88	0.00	4.1	95.9	0.0	0.06	0.77	0.83	2.81	3.0	0.004	0.64	0.0	0.05	18.03	0.00	1.783	3.44	2.05	4.1	95.9	0.0	0.47	1.15	0.77	0.85	2.73	14658	1784	8	0	24	0	0	logfile
✔	8WV4	37864	2024-08-03	2023-10-23	3.3	3.25	3.29	3.3	0.002	0.49	0.0	0.04	14.13	0.00	1.938	5.08	3.33	1.0	99.0	0.0	-2.63	0.74	0.84	4.40	3.3	0.003	0.58	0.0	0.05	15.29	0.00	2.295	6.57	2.00	2.5	97.5	0.0	-1.03	1.17	0.75	0.87	3.88	8170	1030	10	0	10	0	0	logfile
✔	8UQ6	42462	2024-08-04	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	8QX8	18701	2024-08-10	2023-10-23	4.6	4.51	—	2.9	0.002	0.58	0.0	0.04	13.35	0.00	2.225	8.54	0.09	9.3	90.4	0.3	-0.10	0.85	0.75	—	2.4	0.005	0.66	0.0	0.04	13.58	0.00	2.427	9.61	0.00	12.2	87.5	0.3	-0.45	0.33	0.85	0.76	—	30086	4443	6	0	0	0	0	logfile
✔	8UPT	42455	2024-08-02	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8WV5	37865	2024-08-06	2023-10-23	3.5	3.56	3.55	3.6	0.002	0.47	0.0	0.04	12.21	0.00	1.812	6.94	0.00	1.6	98.4	0.0	-3.38	0.81	0.85	3.23	3.5	0.004	0.67	0.0	0.05	15.19	0.00	2.207	7.28	2.00	2.5	97.5	0.0	-1.24	1.65	0.82	0.88	3.38	16340	2060	20	0	20	0	0	logfile
✔	8UPF	42446	2024-08-07	2023-10-22	3.2	3.76	3.25	3.6	0.007	0.65	0.0	0.04	26.92	0.00	1.329	10.34	0.47	4.3	95.7	0.0	-2.24	0.79	0.83	2.25	3.6	0.003	0.59	0.0	0.03	26.59	0.00	2.124	7.96	1.28	3.0	97.0	0.0	1.82	0.46	0.77	0.82	1.54	14012	1006	13	293	2	0	0	logfile
✘	8WUT	37859	2024-08-08	2023-10-21	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18316	1766	6	190	0	0	0	logfile
✘	8WUS	37858	2024-08-08	2023-10-21	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18358	1766	6	192	0	0	0	logfile
✔	8WUU	37860	2024-08-06	2023-10-21	3.2	4.23	3.27	3.3	0.006	0.58	0.0	0.04	20.53	0.00	2.145	6.59	0.00	2.5	97.5	0.0	1.21	0.81	0.61	2.37	3.3	0.005	0.54	0.0	0.04	20.35	0.00	2.490	8.19	1.53	2.8	97.2	0.0	1.11	0.67	0.91	0.88	1.93	14563	1313	5	181	0	0	0	logfile
✘	8WUV	37861	2024-08-08	2023-10-21	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18899	1779	6	213	0	0	0	logfile
✔	8UoY	42441	2024-08-05	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8WUi	37855	2024-08-06	2023-10-20	3.4	3.66	3.48	3.7	0.006	0.84	0.0	0.05	19.52	0.01	1.049	21.56	5.09	6.2	93.0	0.7	-1.15	0.56	0.68	1.43	3.7	0.003	0.70	0.0	0.04	18.47	0.00	2.524	11.89	3.19	5.0	94.5	0.4	-0.06	0.71	0.57	0.76	1.45	15340	1826	8	0	14	0	0	logfile
✔	8WUA	37852	2024-08-02	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	8UoP	42435	2024-08-05	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.65	0.0	0.04	17.06	0.00	2.263	11.38	3.37	12.6	87.1	0.3	-3.11	0.92	0.24	0.23	0.07	13188	872	2	0	0	0	6544	logfile

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