Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Uo4	42427	2024-08-02	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	4.2	0.006	0.67	0.0	0.04	13.55	0.00	2.514	4.96	3.96	5.6	94.4	0.0	0.02	0.96	0.69	0.81	—	5702	910	6	0	3	0	0	logfile
✔	8UNZ	42422	2024-08-03	2023-10-19	3.8	4.17	3.92	4.1	0.005	0.81	0.0	0.06	13.67	0.00	2.238	4.96	0.00	2.4	97.6	0.0	1.00	0.61	0.78	1.40	4.1	0.003	0.52	0.0	0.04	14.66	0.00	2.492	3.36	0.93	2.2	97.8	0.0	1.21	0.34	0.66	0.83	1.43	6329	898	6	0	2	0	0	logfile
✔	8UNM	42409	2024-08-03	2023-10-19	3.4	3.77	3.54	3.7	0.005	0.64	0.0	0.04	13.95	0.00	2.208	3.37	0.00	2.5	97.5	0.0	1.00	0.64	0.86	3.61	3.7	0.003	0.53	0.0	0.04	14.78	0.00	2.496	2.63	2.47	2.2	97.8	0.0	1.48	0.32	0.64	0.86	2.92	6415	889	6	0	2	0	0	logfile
✔	8UNR	42414	2024-08-03	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	15.11	0.00	2.475	2.83	2.35	1.7	98.3	0.0	1.55	0.94	0.65	0.86	2.65	6670	919	6	0	2	2	0	logfile
✔	8Uo3	42426	2024-08-03	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.003	0.53	0.0	0.04	14.45	0.00	2.015	3.61	1.58	3.1	96.9	0.0	0.44	0.94	0.67	0.84	2.92	6650	977	6	0	3	0	0	logfile
✔	8Uo2	42425	2024-08-03	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.46	0.0	0.04	14.64	0.00	2.501	3.02	1.00	1.5	98.5	0.0	1.95	0.93	0.64	0.81	3.01	6504	956	6	0	2	0	0	logfile
✔	8UNV	42418	2024-08-03	2023-10-19	3.3	3.79	3.62	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.004	0.58	0.0	0.04	14.77	0.00	2.408	3.27	1.53	2.5	97.4	0.1	1.18	0.37	0.60	0.84	2.78	6591	911	6	0	2	0	0	logfile
✔	8UNP	42412	2024-08-03	2023-10-19	3.3	3.63	3.39	3.6	0.006	0.80	0.0	0.04	13.79	0.00	2.207	6.73	0.00	1.9	98.1	0.0	0.82	0.65	0.87	3.59	3.6	0.002	0.50	0.0	0.04	15.26	0.00	2.508	2.96	1.37	1.2	98.8	0.0	1.46	1.28	0.64	0.87	2.41	6559	906	6	0	2	1	0	logfile
✔	8Uo0	42423	2024-08-03	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.002	0.49	0.0	0.04	14.61	0.00	2.516	3.21	4.11	2.0	98.0	0.0	1.82	0.33	0.63	0.82	1.65	6222	902	6	0	2	0	0	logfile
✔	8UNW	42419	2024-08-03	2023-10-19	3.4	3.74	3.49	3.7	0.005	0.92	0.0	0.06	15.25	0.00	2.214	4.77	0.16	1.7	98.3	0.0	0.86	0.63	0.84	3.25	3.7	0.003	0.52	0.0	0.04	15.48	0.00	2.488	2.66	2.11	1.7	98.3	0.0	1.27	0.32	0.64	0.86	2.56	6647	900	6	0	2	1	0	logfile
✔	8UNQ	42413	2024-08-03	2023-10-19	3.3	3.68	3.44	3.7	0.004	0.77	0.0	0.05	13.49	0.00	2.218	3.68	0.33	1.4	98.6	0.0	1.09	0.61	0.83	2.97	3.7	0.003	0.51	0.0	0.04	14.57	0.00	2.501	2.97	0.66	1.8	98.2	0.0	1.63	0.93	0.65	0.87	2.88	6687	915	6	0	2	1	0	logfile
✘	8UNo	42411	2024-08-03	2023-10-19	3.3	3.74	3.50	3.7	0.005	0.67	0.0	0.04	13.45	0.00	2.236	5.25	0.17	2.1	97.9	0.0	1.15	0.59	0.82	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6489	894	6	0	2	0	0	logfile
✔	8UNX	42420	2024-08-03	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.003	0.55	0.0	0.04	14.69	0.00	2.500	3.69	1.34	1.5	98.5	0.0	1.73	0.43	0.65	0.84	2.04	6688	923	6	0	2	0	0	logfile
✔	8UNN	42410	2024-08-03	2023-10-19	3.4	3.72	3.46	3.7	0.005	0.67	0.0	0.04	13.92	0.00	2.221	4.22	0.00	1.4	98.6	0.0	0.86	0.65	0.86	3.18	3.7	0.002	0.50	0.0	0.04	14.96	0.00	2.422	2.76	1.75	1.1	98.9	0.0	1.27	0.32	0.67	0.86	2.53	6503	901	6	0	2	1	0	logfile
✔	8UNU	42417	2024-08-03	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.002	0.50	0.0	0.04	15.15	0.00	2.513	3.13	2.01	1.3	98.7	0.0	1.81	0.39	0.64	0.84	2.53	6514	890	6	0	2	0	0	logfile
✔	8UNH	42402	2024-08-08	2023-10-19	3.21	4.17	3.27	3.8	0.004	0.48	0.0	0.04	16.69	0.00	1.974	46.54	0.49	5.3	94.5	0.2	0.09	0.88	0.81	1.72	3.8	0.004	0.74	0.0	0.05	16.93	0.00	1.931	10.59	2.73	4.0	95.9	0.2	0.10	2.41	0.89	0.86	1.65	13244	1683	10	0	4	0	0	logfile
✔	8Uo1	42424	2024-08-03	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	3.9	0.002	0.53	0.0	0.04	14.89	0.00	2.449	2.82	3.31	1.9	98.1	0.0	1.15	0.42	0.66	0.83	2.57	6915	1006	6	0	3	0	0	logfile
✔	8UNJ	42406	2024-08-05	2023-10-19	3.35	3.57	3.40	3.5	0.003	0.70	0.0	0.04	14.94	0.01	2.083	8.59	3.51	2.6	97.4	0.0	-1.77	0.65	0.58	1.04	3.5	0.005	0.80	0.0	0.04	16.40	0.01	1.891	15.74	2.29	4.1	95.9	0.0	-0.05	1.78	0.69	0.67	0.96	11916	1493	9	0	7	0	0	logfile
✔	8WU1	37849	2024-08-03	2023-10-19	3.2	3.40	3.17	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.002	0.59	0.0	0.04	13.94	0.00	2.582	6.36	1.30	2.2	97.8	0.0	0.29	0.36	0.65	0.78	3.10	7250	1014	5	0	1	0	0	logfile
✘	8UNS	42415	2024-08-03	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile

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