Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UN7	42394	2024-08-05	2023-10-18	3.55	3.01	3.15	3.2	0.004	0.75	4.0	0.05	18.14	0.00	1.628	6.45	4.72	12.7	86.4	0.9	-4.64	0.71	0.83	2.45	3.2	0.003	0.62	0.0	0.05	17.82	0.00	2.274	4.30	5.07	15.1	84.7	0.2	-4.38	0.29	0.74	0.83	2.46	14296	1752	16	0	24	0	0	logfile
✔	8UMV	42385	2024-08-08	2023-10-18	2.75	2.95	2.82	3.0	0.003	0.68	0.0	0.05	15.43	0.01	2.062	7.08	1.69	2.2	97.8	0.0	-1.56	0.71	0.83	3.28	3.0	0.006	0.68	0.0	0.04	17.77	0.01	1.898	8.45	2.60	2.0	98.0	0.0	0.56	0.95	0.74	0.88	3.13	21860	2647	15	47	9	0	0	logfile
✔	8WST	37824	2024-08-03	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.003	0.61	0.0	0.04	14.84	0.00	2.523	5.22	2.77	4.2	95.7	0.1	1.09	1.45	0.64	0.80	3.78	8286	1055	6	0	0	0	0	logfile
✔	8UMD	42376	2024-08-03	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.004	0.80	0.0	0.04	17.27	0.00	2.480	13.61	3.26	4.7	95.0	0.3	0.69	1.76	0.51	0.85	0.98	7201	911	6	0	0	0	0	logfile
✔	8UMC	42375	2024-08-03	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.9	0.003	0.65	0.0	0.04	18.05	0.01	2.163	9.27	3.49	2.9	97.1	0.0	0.19	0.39	0.81	0.81	3.16	7198	890	6	0	2	0	0	logfile
✔	8WSS	37823	2024-08-03	2023-10-17	3.01	2.86	2.95	3.1	0.002	0.46	0.0	0.04	9.95	0.00	2.082	6.49	0.43	2.3	97.7	0.0	1.40	0.71	0.83	2.49	3.1	0.004	0.60	0.0	0.04	14.47	0.00	2.466	7.52	3.41	3.4	96.5	0.1	0.73	0.64	0.72	0.87	3.09	8797	1143	6	0	0	0	0	logfile
✔	8WRo	37784	2024-08-10	2023-10-15	3.9	4.30	3.87	4.0	0.004	0.79	0.0	0.05	18.35	0.01	2.237	8.70	0.33	8.4	91.4	0.1	-2.06	0.79	0.69	0.35	4.0	0.005	0.81	1.0	0.04	18.31	0.00	2.124	14.72	3.71	7.4	92.5	0.0	-1.42	1.42	0.82	0.81	1.07	29807	3780	4	0	0	0	0	logfile
✔	8WRL	37779	2024-08-03	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.6	0.002	0.52	0.0	0.04	17.23	0.00	2.447	6.72	3.46	3.2	96.8	0.0	0.64	0.33	0.52	0.77	1.21	6472	790	4	0	5	0	0	logfile
✔	8WRM	37781	2024-08-10	2023-10-15	4.34	4.58	4.54	4.2	0.004	0.89	0.0	0.05	14.47	0.01	2.196	7.52	0.03	8.4	91.5	0.1	-2.50	0.80	0.76	—	4.2	0.003	0.68	0.0	0.05	14.31	0.00	2.163	13.35	0.06	9.2	90.7	0.1	-1.64	0.71	0.81	0.79	—	29931	3793	4	0	0	0	0	logfile
✔	8WRH	37776	2024-08-03	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.56	0.0	0.04	17.80	0.00	2.495	6.97	2.02	4.1	95.9	0.0	0.70	0.90	0.59	0.82	1.73	6459	790	3	0	4	0	0	logfile
✘	8UKM	42355	2024-08-09	2023-10-14	4.2	4.65	4.50	4.5	0.004	0.75	0.0	0.05	13.15	0.01	2.220	21.35	0.00	4.5	95.5	0.0	0.17	0.81	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26184	3528	24	0	0	0	0	logfile
✔	8WR4	37762	2024-08-10	2023-10-13	3.07	2.37	3.12	2.0	0.004	0.57	0.0	0.04	19.22	0.00	1.974	10.44	0.33	4.6	95.3	0.1	-0.06	0.66	0.71	1.72	2.0	0.003	0.60	0.0	0.04	20.03	0.00	2.240	7.66	1.48	4.5	95.4	0.1	0.14	0.52	0.71	0.74	1.83	30250	2922	10	282	2	0	0	logfile
✔	8QT7	18645	2024-08-02	2023-10-12	2.2	2.42	2.27	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.003	0.61	0.0	0.04	19.31	0.00	2.498	3.79	0.86	1.8	98.2	0.0	1.70	3.68	0.60	0.79	3.77	3516	399	2	0	4	65	0	logfile
✔	8QTD	18649	2024-08-02	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.003	0.59	0.0	0.04	13.28	0.00	2.470	7.03	2.63	4.5	95.5	0.0	-0.16	0.89	0.56	0.80	3.16	3219	413	3	0	0	0	0	logfile
✔	8WQR	37752	2024-08-04	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.003	0.67	0.0	0.05	14.07	0.00	2.580	10.26	1.61	7.0	92.9	0.1	-2.57	0.44	0.82	0.68	1.72	9681	1415	2	0	0	0	0	logfile
✔	8UKD	42352	2024-08-09	2023-10-12	2.9	3.06	3.10	3.1	0.006	0.83	0.0	0.06	14.07	0.01	2.280	2.78	0.04	4.7	95.3	0.0	-1.52	0.68	0.79	3.08	3.1	0.003	0.54	0.0	0.04	15.60	0.00	2.476	4.41	1.80	3.7	96.3	0.0	0.03	0.34	0.71	0.84	2.95	24777	3123	6	0	27	0	0	logfile
✔	8WQW	37756	2024-08-06	2023-10-12	3.27	2.51	3.28	1.9	0.005	0.70	0.0	0.05	13.42	0.01	2.125	9.31	0.10	5.2	94.8	0.0	-0.92	0.71	0.67	2.47	1.8	0.004	0.72	0.0	0.05	15.52	0.01	2.587	9.42	2.73	6.5	93.5	0.0	-0.96	1.03	0.74	0.72	2.12	8972	1174	8	0	5	0	0	logfile
✔	8QT9	18646	2024-08-02	2023-10-12	2.36	2.58	2.35	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.003	0.61	0.0	0.04	19.18	0.00	2.551	4.23	1.44	2.0	98.0	0.0	1.68	0.19	0.61	0.79	3.65	3511	399	2	0	4	64	0	logfile
✔	8WQV	37755	2024-08-11	2023-10-12	2.7	2.88	2.85	2.9	0.006	0.59	0.0	0.04	14.83	0.00	1.957	3.50	1.35	1.0	99.0	0.0	-1.60	0.67	0.83	4.19	2.9	0.003	0.44	0.0	0.04	16.71	0.00	2.077	2.40	1.29	0.0	100.0	0.0	2.80	1.86	0.69	0.84	2.28	32737	3937	48	0	24	0	0	logfile
✔	8QTA	18647	2024-08-02	2023-10-12	2.64	2.83	2.66	2.8	0.009	0.97	0.0	0.04	20.12	0.00	2.155	7.45	1.16	2.5	97.5	0.0	-0.55	0.61	0.80	3.80	2.8	0.003	0.70	0.0	0.04	19.53	0.00	2.482	6.14	1.73	3.0	97.0	0.0	0.81	0.26	0.59	0.79	3.95	3472	399	2	0	4	27	0	logfile

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