Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WQR	37752	2024-08-04	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.003	0.67	0.0	0.05	14.07	0.00	2.580	10.26	1.61	7.0	92.9	0.1	-2.57	0.44	0.82	0.68	1.72	9681	1415	2	0	0	0	0	logfile
✔	8QTA	18647	2024-08-02	2023-10-12	2.64	2.83	2.66	2.8	0.009	0.97	0.0	0.04	20.12	0.00	2.155	7.45	1.16	2.5	97.5	0.0	-0.55	0.61	0.80	3.80	2.8	0.003	0.70	0.0	0.04	19.53	0.00	2.482	6.14	1.73	3.0	97.0	0.0	0.81	0.26	0.59	0.79	3.95	3472	399	2	0	4	27	0	logfile
✔	8WQV	37755	2024-08-11	2023-10-12	2.7	2.88	2.85	2.9	0.006	0.59	0.0	0.04	14.83	0.00	1.957	3.50	1.35	1.0	99.0	0.0	-1.60	0.67	0.83	4.19	2.9	0.003	0.44	0.0	0.04	16.71	0.00	2.077	2.40	1.29	0.0	100.0	0.0	2.80	1.86	0.69	0.84	2.28	32737	3937	48	0	24	0	0	logfile
✔	8QSQ	18639	2024-08-03	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.004	0.77	0.0	0.04	14.41	0.00	2.498	22.89	1.58	5.0	95.0	0.0	-0.37	2.40	0.64	0.74	0.72	6512	791	3	0	6	0	0	logfile
✔	8UK1	42342	2024-08-09	2023-10-11	3.0	3.18	3.02	3.2	0.004	0.75	0.0	0.05	13.80	0.01	2.297	2.34	0.00	3.9	96.1	0.0	-0.95	0.67	0.81	3.00	3.2	0.004	0.59	0.0	0.05	15.14	0.00	2.458	3.75	1.75	3.5	96.5	0.0	0.00	1.13	0.69	0.84	2.96	24806	3097	15	0	46	0	0	logfile
✔	8WQD	37740	2024-08-02	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.003	0.53	0.0	0.04	16.80	0.00	2.532	9.02	2.19	6.1	93.9	0.0	0.45	0.33	0.68	0.83	1.82	5046	641	2	0	0	0	0	logfile
✔	8WQE	37742	2024-08-11	2023-10-11	3.38	3.75	3.42	3.7	0.003	0.56	0.0	0.04	14.84	0.00	2.173	8.55	0.07	5.1	94.9	0.0	-0.73	0.72	0.71	2.00	3.7	0.003	0.57	0.0	0.04	16.56	0.00	2.035	9.81	1.73	5.2	94.8	0.0	0.10	0.99	0.77	0.81	1.59	26301	3275	14	0	6	0	0	logfile
✔	8WQA	37736	2024-08-11	2023-10-11	3.39	3.69	3.48	3.6	0.003	0.64	0.0	0.04	14.89	0.00	2.059	9.55	0.14	4.9	95.1	0.0	-0.70	0.79	0.79	2.00	3.6	0.004	0.61	0.0	0.04	16.29	0.00	2.159	9.49	1.37	5.1	94.9	0.0	0.22	0.35	0.78	0.76	1.75	26479	3301	14	0	6	0	0	logfile
✔	8WQF	37743	2024-08-10	2023-10-11	3.27	3.60	3.33	3.6	0.004	0.60	0.0	0.04	14.92	0.00	2.199	8.04	0.00	6.4	93.6	0.0	-0.93	0.60	0.57	2.34	3.6	0.003	0.59	0.0	0.04	16.75	0.00	2.429	9.75	1.46	5.7	94.3	0.0	-0.12	0.99	0.74	0.82	1.90	23404	2901	13	0	6	0	0	logfile
✔	8WQi	37746	2024-08-02	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.66	0.0	0.04	16.79	0.00	2.443	11.56	1.46	8.9	91.1	0.0	-0.36	0.53	0.65	0.80	0.91	5074	644	2	0	0	0	0	logfile
✘	8WQH	37745	2024-08-11	2023-10-11	3.44	3.76	3.60	3.7	0.003	0.54	0.0	0.04	14.59	0.00	2.051	8.46	0.00	5.1	94.9	0.0	-0.88	0.78	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24811	3091	14	0	6	0	0	logfile
✔	8Ui8	42288	2024-08-07	2023-10-10	3.1	3.26	3.14	3.2	0.005	0.85	0.0	0.05	17.83	0.01	2.003	7.70	0.91	2.5	97.5	0.0	-1.06	0.77	0.86	2.28	3.2	0.003	0.62	0.0	0.04	17.78	0.00	1.922	9.66	3.40	2.6	97.4	0.0	0.73	0.41	0.78	0.86	2.20	19822	2499	12	0	8	0	0	logfile
✔	8Ui7	42287	2024-08-08	2023-10-10	4.2	4.65	4.37	4.2	0.004	0.97	0.0	0.05	14.14	0.01	1.992	10.65	0.04	3.4	96.6	0.0	-1.37	0.85	0.77	—	4.2	0.003	0.72	0.0	0.04	14.26	0.00	1.850	15.16	0.00	3.7	96.3	0.0	-0.14	0.99	0.85	0.78	—	21831	2760	13	0	8	0	0	logfile
✘	8QSN	18637	2024-08-02	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✔	8UiR	42302	2024-08-09	2023-10-10	3.2	3.38	3.20	3.4	0.004	0.71	0.0	0.05	14.13	0.01	2.307	2.38	0.04	4.0	96.0	0.0	-1.30	0.71	0.82	2.71	3.4	0.003	0.55	0.0	0.05	14.92	0.00	2.493	3.42	1.22	3.2	96.8	0.0	0.01	1.14	0.70	0.84	2.58	24879	3105	15	0	48	0	0	logfile
✔	8WPU	37724	2024-08-07	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.3	0.007	0.68	0.0	0.05	16.31	0.00	2.288	8.84	3.66	6.6	93.4	0.0	-0.80	0.37	0.76	0.84	2.19	18794	2455	10	0	22	0	0	logfile
✔	8QSK	18634	2024-08-03	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.63	0.0	0.04	14.59	0.00	2.569	7.82	2.68	7.0	93.0	0.0	1.99	0.86	0.79	0.79	1.38	8506	1046	4	0	16	0	0	logfile
✔	8QSL	18635	2024-08-03	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.94	0.0	0.05	15.87	0.00	2.487	11.27	2.44	7.1	92.9	0.0	0.96	1.19	0.58	0.77	1.29	8506	1046	4	0	16	0	0	logfile
✔	8Uii	42295	2024-08-08	2023-10-10	3.04	3.25	3.10	3.3	0.003	0.76	0.0	0.05	16.55	0.01	2.061	7.23	0.70	2.5	97.5	0.0	-1.06	0.72	0.79	2.15	3.2	0.003	0.60	0.0	0.04	16.90	0.00	1.950	9.98	3.14	2.2	97.8	0.0	0.23	0.30	0.71	0.80	2.13	21704	2743	13	0	9	0	0	logfile
✔	8WPP	37722	2024-08-06	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.004	0.64	0.0	0.04	18.47	0.00	2.321	12.33	1.37	3.1	96.9	0.0	-0.08	0.51	0.72	0.82	2.98	16826	1909	9	69	0	0	0	logfile

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