Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8S86	19798	2024-08-02	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.003	0.70	0.0	0.05	15.79	0.00	2.439	14.91	2.84	3.4	96.6	0.0	-0.25	1.20	0.59	0.64	2.28	6177	785	2	0	0	0	0	logfile
✔	8YKX	39375	2024-08-03	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.56	0.0	0.04	15.66	0.00	2.591	4.92	1.18	1.9	98.1	0.0	1.52	0.85	0.60	0.84	4.07	8710	1121	6	0	1	0	0	logfile
✔	8YJY	39353	2024-08-02	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.66	0.0	0.04	17.79	0.00	2.482	7.83	2.64	3.8	96.2	0.0	1.64	0.86	0.66	0.74	1.49	4254	530	2	0	0	0	0	logfile
✔	8Yi7	39311	2024-08-02	2024-02-29	3.57	3.79	3.54	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.60	0.0	0.04	14.96	0.00	2.476	5.53	1.75	2.6	97.4	0.0	0.30	1.48	0.71	0.84	1.91	5586	697	6	0	4	0	0	logfile
✔	9AUC	43877	2024-08-04	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.003	0.58	0.0	0.04	16.38	0.00	2.464	5.10	1.37	2.2	97.8	0.0	0.88	0.66	0.64	0.83	3.48	10369	1275	11	0	10	16	0	logfile
✔	8YH9	39285	2024-08-07	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.003	0.64	0.0	0.04	20.58	0.00	2.460	11.37	6.61	8.4	91.6	0.0	-2.24	0.93	0.67	0.72	1.03	21153	2450	10	60	0	0	0	logfile
✔	8YHA	39286	2024-08-10	2024-02-27	3.4	3.38	3.36	3.3	0.003	0.62	0.0	0.04	20.62	0.00	1.865	6.67	0.54	6.1	93.9	0.0	-0.99	0.82	0.84	2.19	3.3	0.007	0.71	0.0	0.05	20.63	0.00	2.361	7.26	3.85	8.6	91.4	0.0	-0.64	0.28	0.83	0.87	2.44	28503	3333	14	108	2	0	0	logfile
✔	9ASL	43818	2024-08-08	2024-02-26	3.5	3.93	3.52	3.9	0.003	0.66	0.0	0.04	18.71	0.01	2.155	16.35	0.48	5.1	94.9	0.0	-1.52	0.76	0.75	1.34	3.8	0.003	0.67	0.0	0.04	18.48	0.00	2.507	11.72	3.83	4.6	95.4	0.0	-0.49	1.19	0.75	0.77	0.97	23128	2964	4	0	0	0	0	logfile
✔	9ASK	43817	2024-08-04	2024-02-26	3.6	4.04	3.67	3.9	0.003	0.60	0.0	0.04	18.52	0.00	2.275	14.03	0.40	4.4	95.6	0.0	-1.03	0.71	0.70	0.95	3.9	0.003	0.66	0.0	0.04	18.97	0.00	2.595	12.02	5.27	4.5	95.4	0.1	-0.64	1.06	0.70	0.70	0.85	11564	1482	2	0	0	0	0	logfile
✘	8YGJ	39253	2024-08-08	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✔	9ASJ	43816	2024-08-04	2024-02-26	3.5	3.98	3.57	3.9	0.005	0.71	0.0	0.04	18.82	0.00	2.184	13.04	0.24	4.6	95.4	0.0	-1.01	0.73	0.72	1.19	3.9	0.003	0.66	0.0	0.04	18.88	0.00	2.517	11.25	3.59	5.5	94.3	0.1	-0.19	1.41	0.72	0.73	1.29	11626	1482	4	0	2	0	0	logfile
✘	9ARF	43780	2024-08-08	2024-02-23	3.13	3.32	3.17	3.3	0.010	1.16	42.0	0.08	11.19	0.01	1.985	8.25	5.16	4.6	95.3	0.1	-3.34	0.69	0.76	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23032	3166	10	0	6	0	0	logfile
✔	9ARE	43779	2024-08-07	2024-02-23	3.72	4.00	3.78	3.9	0.007	0.98	36.0	0.07	11.57	0.01	2.124	10.72	5.24	4.8	95.1	0.1	-2.47	0.65	0.65	1.31	3.9	0.005	0.68	0.0	0.04	13.09	0.00	2.502	4.40	6.18	6.6	93.4	0.0	0.10	0.55	0.68	0.71	1.73	19222	3172	8	0	0	0	0	logfile
✔	8S5L	19739	2024-08-09	2024-02-23	3.8	4.03	3.83	3.9	0.006	0.78	0.0	0.04	15.68	0.01	1.962	8.71	0.14	5.6	94.2	0.2	-0.18	0.81	0.80	2.00	3.9	0.004	0.59	0.0	0.04	16.05	0.00	2.233	6.23	1.50	5.4	94.6	0.0	-0.15	0.99	0.81	0.79	1.82	27289	1740	8	0	6	0	13603	logfile
✔	9ARi	43783	2024-08-07	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.004	0.70	0.0	0.04	12.76	0.00	2.439	7.07	5.87	8.4	91.6	0.0	-1.04	1.23	0.70	0.72	1.23	20756	3178	6	0	0	0	0	logfile
✔	9ARH	43782	2024-08-08	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.736	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.004	0.81	2.0	0.05	14.34	0.00	1.972	7.59	4.67	7.8	92.1	0.1	-0.68	1.62	0.69	0.73	1.08	22792	3182	10	0	6	0	0	logfile
✔	8YF0	39206	2024-08-04	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.68	0.0	0.04	16.70	0.00	2.468	12.21	2.47	2.8	97.2	0.0	1.04	0.43	0.54	0.65	0.61	9181	1159	2	0	0	0	0	logfile
✔	9ARG	43781	2024-08-08	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.112	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.004	0.70	0.0	0.04	10.11	0.00	2.589	7.81	0.00	6.2	93.8	0.0	-0.80	1.12	0.73	0.73	—	21008	3166	4	0	0	0	0	logfile
✔	8YF1	39207	2024-08-04	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile
✔	8YEo	39200	2024-08-08	2024-02-22	3.44	4.39	3.47	3.8	0.003	0.60	0.0	0.04	20.20	0.00	2.252	6.90	0.42	5.0	95.0	0.0	-0.97	0.92	0.85	2.26	3.8	0.003	0.61	0.0	0.04	20.07	0.00	2.473	7.75	2.39	5.1	94.9	0.0	-0.06	0.45	0.93	0.90	2.24	24197	2680	12	119	0	0	0	logfile

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