Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W35	43762	2024-08-02	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✘	8W2o	43753	2024-08-09	2024-02-20	3.49	3.88	3.52	3.8	0.007	1.00	0.0	0.05	20.62	0.01	1.255	11.79	0.41	4.3	95.5	0.2	0.04	0.78	0.81	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28117	2739	18	330	0	0	0	logfile
✔	8S3E	19691	2024-08-11	2024-02-20	2.39	2.88	2.50	2.8	0.003	0.76	0.0	0.07	16.61	0.00	2.107	7.04	1.81	2.4	97.6	0.0	0.94	0.65	0.78	2.68	2.8	0.004	0.82	0.0	0.07	16.98	0.00	2.176	8.09	2.08	2.9	97.1	0.0	0.76	0.38	0.60	0.76	2.62	31585	3800	16	0	68	13	0	logfile
✔	8W22	43737	2024-08-02	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.1	0.004	0.69	0.0	0.04	12.25	0.00	2.610	3.36	3.89	5.2	94.8	0.0	-0.02	0.76	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8W20	43736	2024-08-06	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.005	0.72	0.0	0.04	8.29	0.00	2.587	3.17	0.00	4.6	95.4	0.0	1.21	1.83	0.70	0.72	—	15412	2814	11	0	0	0	0	logfile
✔	8YDB	39167	2024-08-08	2024-02-19	3.4	4.36	3.41	3.7	0.003	0.58	0.0	0.04	19.62	0.00	2.225	5.90	0.42	6.2	93.8	0.0	-0.84	0.88	0.76	2.54	3.7	0.003	0.75	1.0	0.04	19.62	0.00	2.298	7.77	1.92	6.2	93.8	0.0	-0.11	0.47	0.93	0.90	2.53	23880	2682	12	103	0	0	0	logfile
✔	8YC0	39128	2024-08-02	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.004	0.76	0.0	0.04	14.05	0.00	2.455	12.03	0.00	7.4	92.6	0.0	-0.77	1.32	0.61	0.73	—	4635	583	9	0	1	0	0	logfile
✔	8W15	43715	2024-08-08	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.003	0.62	0.0	0.04	16.60	0.00	2.293	6.92	1.53	2.8	97.2	0.0	2.00	0.32	0.86	0.87	2.12	21207	2710	2	0	0	0	0	logfile
✔	8W12	43714	2024-08-10	2024-02-14	3.5	3.04	3.63	3.5	0.003	0.70	0.0	0.05	14.49	0.01	2.219	5.77	0.00	3.0	97.0	0.0	-0.33	0.84	0.82	1.93	3.3	0.005	0.78	0.0	0.05	16.67	0.00	2.275	8.47	3.23	3.8	96.2	0.0	0.22	0.53	0.85	0.83	1.78	29248	3628	6	0	0	0	0	logfile
✔	8YBK	39120	2024-08-04	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8YBJ	39119	2024-08-04	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBE	39117	2024-08-02	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.004	0.67	0.0	0.04	16.69	0.00	2.584	10.50	2.01	2.2	97.8	0.0	1.25	0.34	0.68	0.83	5.59	3110	370	3	0	2	197	0	logfile
✔	8W0A	43706	2024-08-04	2024-02-13	3.2	3.72	3.22	3.6	0.003	0.59	0.0	0.04	19.61	0.00	1.561	10.62	0.09	8.1	91.9	0.0	-1.76	0.72	0.71	1.67	3.6	0.002	0.58	0.0	0.04	19.63	0.00	2.360	9.35	3.98	6.9	93.1	0.0	-1.21	0.46	0.70	0.72	0.75	10216	1272	4	14	0	0	0	logfile
✔	8VZo	43684	2024-08-02	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.005	0.64	0.0	0.05	15.30	0.01	2.597	5.00	1.54	2.6	97.4	0.0	1.92	0.50	0.67	0.89	4.03	4796	615	4	0	1	0	0	logfile
✔	8VZN	43683	2024-08-02	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.004	0.60	0.0	0.04	15.43	0.00	2.616	4.92	1.20	2.0	98.0	0.0	1.67	0.96	0.61	0.87	3.86	4656	596	4	0	1	0	0	logfile
✔	8RZL	19608	2024-08-03	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	1.332	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.67	0.0	0.04	11.42	0.00	2.494	3.51	1.79	2.7	97.3	0.0	1.09	0.48	0.87	0.90	5.29	8895	915	35	0	155	0	0	logfile
✘	8YB6	39110	2024-08-09	2024-02-11	3.06	3.33	3.22	3.4	0.003	0.62	0.0	0.04	20.08	0.00	2.234	7.16	0.14	8.7	91.3	0.0	-1.49	0.72	0.83	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27758	3363	13	61	2	0	0	logfile
✔	8VYG	43660	2024-08-02	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.003	0.65	0.0	0.04	15.84	0.00	2.538	5.77	1.79	2.5	97.5	0.0	0.09	1.48	0.54	0.77	2.67	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2024-08-02	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.006	0.67	0.0	0.05	12.54	0.00	2.537	2.75	2.59	3.1	96.9	0.0	0.56	0.53	0.68	0.88	5.21	5132	715	9	0	12	0	0	logfile
✔	8Y95	39070	2024-08-03	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.64	0.0	0.04	15.01	0.00	2.323	10.39	4.01	3.6	96.4	0.0	0.82	1.10	0.56	0.79	2.52	9018	1124	4	0	6	0	0	logfile

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