Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XJ8	38396	2024-09-27	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.60	0.0	0.04	17.71	0.00	2.097	4.98	1.89	3.9	95.6	0.5	0.22	2.93	0.74	0.86	2.90	15904	1957	10	6	6	0	0	logfile
✔	8VE6	43166	2024-09-23	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.61	0.0	0.05	12.10	0.01	2.610	4.11	0.00	1.5	98.5	0.0	-0.17	0.43	0.78	0.79	—	3178	465	5	0	1	0	0	logfile
✔	8VE1	43161	2024-09-23	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.003	0.60	0.0	0.05	15.74	0.00	2.352	5.47	1.56	2.4	97.6	0.0	-0.15	0.39	0.76	0.87	5.33	3656	466	10	0	2	27	0	logfile
✔	8VDZ	43157	2024-09-29	2023-12-18	2.7	2.80	2.60	2.8	0.003	0.46	0.0	0.04	11.96	0.00	2.056	4.30	0.00	0.2	99.8	0.0	3.43	0.72	0.84	4.07	2.8	0.003	0.45	0.0	0.04	16.64	0.00	2.577	4.66	1.37	0.4	99.6	0.0	3.15	0.33	0.73	0.87	3.41	23700	3087	24	0	0	0	0	logfile
✔	8VE0	43160	2024-09-23	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.56	0.0	0.05	15.25	0.00	2.542	6.83	1.42	1.5	98.5	0.0	0.93	0.68	0.73	0.81	3.87	3527	466	6	0	2	0	0	logfile
✔	8VE7	43167	2024-09-23	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.515	8.36	2.54	3.1	96.9	0.0	2.88	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8VE2	43162	2024-09-23	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.003	0.58	0.0	0.05	12.90	0.01	2.624	7.50	5.05	2.4	97.6	0.0	0.19	0.68	0.76	0.79	3.74	3105	465	4	0	0	0	0	logfile
✔	8Ri9	19184	2024-09-23	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.004	0.61	0.0	0.05	11.68	0.00	2.366	4.50	0.00	10.2	89.8	0.0	-2.48	0.63	0.29	0.64	6.15	4230	295	5	0	0	0	2180	logfile
✔	8VE4	43164	2024-09-23	2023-12-18	3.3	3.35	3.10	3.3	0.003	0.56	0.0	0.05	10.45	0.01	2.302	7.13	0.00	1.3	98.7	0.0	1.77	0.74	0.75	4.32	3.3	0.003	0.66	0.0	0.05	13.08	0.01	2.597	8.83	4.66	2.6	97.4	0.0	-0.36	0.43	0.75	0.78	3.61	3148	465	4	0	0	0	0	logfile
✔	8VE3	43163	2024-09-23	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.002	0.61	0.0	0.05	13.12	0.01	2.589	8.57	5.08	2.2	97.8	0.0	0.27	0.42	0.75	0.78	3.69	3210	466	4	0	0	0	0	logfile
✔	8VE5	43165	2024-09-23	2023-12-18	3.4	3.67	3.31	3.8	0.005	0.58	0.0	0.05	11.51	0.01	2.216	7.40	0.00	2.2	97.8	0.0	0.60	0.72	0.80	4.97	3.8	0.004	0.60	0.0	0.05	14.51	0.01	2.594	5.70	2.97	3.1	96.9	0.0	0.24	0.38	0.71	0.81	4.76	3382	467	5	0	1	0	0	logfile
✔	8RHZ	19179	2024-09-27	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.2	0.003	0.53	0.0	0.04	13.23	0.00	2.077	3.03	1.67	3.0	97.0	0.0	3.48	0.91	0.76	0.78	2.01	15223	2439	6	0	6	0	0	logfile
✔	8XH7	38343	2024-09-24	2023-12-17	3.52	3.84	3.46	3.9	0.005	0.91	0.0	0.06	14.93	0.00	2.376	7.40	2.17	4.5	95.5	0.0	2.45	0.57	0.77	1.35	3.9	0.003	0.64	0.0	0.03	17.02	0.00	2.505	8.66	3.02	4.6	95.4	0.0	3.54	0.72	0.55	0.78	1.40	7902	966	6	0	0	0	0	logfile
✔	8XH6	38342	2024-09-23	2023-12-17	3.52	3.74	3.34	3.8	0.003	0.59	0.0	0.04	14.08	0.00	2.397	7.22	0.00	2.8	97.2	0.0	1.24	0.52	0.75	0.63	3.8	0.003	0.60	0.0	0.03	16.75	0.00	2.484	7.58	1.45	2.8	97.2	0.0	2.91	0.40	0.53	0.76	1.10	2634	322	2	0	0	0	0	logfile
✔	8RH9	19173	2024-09-26	2023-12-15	3.21	3.47	3.25	3.5	0.003	0.64	0.0	0.04	9.29	0.00	2.083	4.71	0.06	2.7	97.3	0.0	1.60	0.65	0.84	3.69	3.5	0.002	0.51	0.0	0.04	13.66	0.00	2.542	3.03	2.07	2.7	97.3	0.0	1.81	0.87	0.68	0.87	2.74	14247	1665	15	0	51	17	0	logfile
✔	8XGR	38330	2024-09-25	2023-12-15	3.2	3.95	3.21	3.7	0.003	0.56	0.0	0.04	13.83	0.00	2.126	7.33	0.22	3.7	96.3	0.0	-2.13	0.69	0.74	2.11	3.7	0.003	0.81	0.0	0.05	16.35	0.00	2.422	12.15	3.56	2.9	97.1	0.0	-0.78	0.99	0.68	0.78	0.90	8206	1049	5	0	0	0	0	logfile
✘	8RH7	19171	2024-09-26	2023-12-15	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13866	1610	15	0	61	20	0	logfile
✘	8RH8	19172	2024-09-26	2023-12-15	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14067	1645	15	0	42	135	0	logfile
✔	8XGM	38328	2024-09-25	2023-12-15	3.29	3.80	3.43	3.7	0.004	0.69	0.0	0.05	17.55	0.00	2.112	10.60	0.36	5.9	94.1	0.0	-0.68	0.58	0.78	2.33	3.7	0.003	0.62	0.0	0.04	17.64	0.00	2.506	7.13	4.48	5.4	94.6	0.0	-0.19	0.38	0.58	0.78	2.26	10319	1302	7	0	1	0	0	logfile
✘	8RHG	19175	2024-09-26	2023-12-15	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13897	1650	10	0	26	0	0	logfile

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