Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VCH	43136	2024-09-24	2023-12-14	2.55	2.23	2.74	3.3	0.004	0.58	0.0	0.04	15.04	0.00	2.260	5.83	0.78	2.2	97.8	0.0	2.09	0.72	0.80	2.33	3.3	0.003	0.53	0.0	0.04	15.95	0.00	2.522	5.23	2.59	2.1	97.9	0.0	2.99	0.29	0.74	0.82	1.58	7614	1012	6	0	2	0	0	logfile
✔	8VDC	43146	2024-09-23	2023-12-14	3.5	3.36	3.50	3.3	0.006	0.75	0.0	0.05	13.43	0.01	2.377	1.34	0.00	2.1	97.9	0.0	-1.87	0.80	0.85	3.14	3.3	0.002	0.50	0.0	0.04	15.19	0.00	2.594	2.84	1.04	1.7	98.3	0.0	1.19	1.47	0.80	0.85	2.63	47064	5736	24	0	0	0	0	logfile
✔	8RGZ	19163	2024-09-28	2023-12-14	3.27	3.29	3.12	3.3	0.011	1.10	0.0	0.07	13.47	0.01	2.198	12.25	0.19	2.6	97.4	0.0	-0.38	0.72	0.82	3.39	3.3	0.005	0.64	0.0	0.04	15.61	0.00	2.472	8.74	2.30	3.3	96.7	0.0	-0.56	0.47	0.75	0.83	2.94	19545	2442	9	0	0	0	0	logfile
✔	8VD8	43145	2024-09-23	2023-12-14	3.2	2.93	3.17	3.1	0.007	0.81	0.0	0.05	13.73	0.01	2.181	0.80	0.00	1.9	98.1	0.0	-0.87	0.66	0.83	3.38	3.1	0.003	0.56	0.0	0.04	16.76	0.00	2.485	3.46	2.44	2.1	97.9	0.0	0.83	0.71	0.67	0.85	3.02	47880	5832	24	0	0	0	0	logfile
✔	8VCR	43139	2024-09-27	2023-12-14	3.0	2.18	3.02	2.0	0.008	0.77	0.0	0.05	13.52	0.01	2.139	3.13	0.00	4.0	96.0	0.0	0.07	0.80	0.80	3.92	1.9	0.008	0.72	0.0	0.05	15.86	0.01	2.461	5.00	2.23	3.6	96.4	0.0	0.64	0.40	0.81	0.82	4.04	15987	2040	18	0	21	0	0	logfile
✔	8RH0	19164	2024-09-28	2023-12-14	3.44	3.40	3.32	3.4	0.005	0.62	0.0	0.05	14.04	0.01	2.202	6.74	0.00	1.1	98.9	0.0	0.19	0.79	0.85	3.38	3.4	0.004	0.56	0.0	0.04	15.79	0.00	2.507	4.72	2.24	2.2	97.8	0.0	0.24	1.27	0.78	0.86	3.15	19137	2421	9	0	0	0	0	logfile
✔	8VDE	43147	2024-09-28	2023-12-14	3.4	3.79	3.62	3.7	0.006	0.86	0.0	0.05	13.48	0.01	2.235	1.81	0.09	3.4	96.6	0.0	-1.45	0.59	0.79	2.60	3.7	0.006	0.74	0.0	0.04	16.66	0.00	2.299	7.99	1.77	3.5	96.5	0.0	0.52	0.89	0.61	0.85	1.90	70177	8643	27	0	0	0	0	logfile
✔	8RH1	19165	2024-09-28	2023-12-14	3.45	3.21	3.42	3.4	0.008	0.85	0.0	0.06	13.62	0.01	2.230	10.64	0.00	2.4	97.6	0.0	-0.79	0.76	0.79	2.71	3.3	0.006	0.65	0.0	0.04	15.66	0.00	2.462	8.18	2.58	2.5	97.5	0.0	-0.38	1.42	0.81	0.83	2.47	19560	2442	9	0	0	0	0	logfile
✔	8RH2	19166	2024-09-28	2023-12-14	3.12	3.16	3.04	3.2	0.005	0.58	0.0	0.05	14.37	0.01	2.205	7.05	0.05	1.9	98.1	0.0	0.07	0.78	0.86	3.67	3.2	0.003	0.51	0.0	0.04	15.69	0.00	2.562	5.32	1.80	2.2	97.8	0.0	0.33	0.32	0.81	0.88	3.32	19152	2421	9	0	0	0	0	logfile
✔	8VC2	43130	2024-09-26	2023-12-13	3.98	4.39	3.99	4.4	0.006	0.84	0.0	0.04	14.09	0.01	2.353	2.91	0.31	2.4	97.6	0.0	-0.98	0.57	0.71	1.08	4.4	0.003	0.81	0.0	0.04	16.34	0.00	2.556	9.39	3.46	2.0	98.0	0.0	3.06	2.22	0.55	0.72	0.69	11796	1516	8	0	4	0	0	logfile
✔	8RGH	19133	2024-09-25	2023-12-13	3.9	4.34	3.89	4.0	0.012	1.88	4.0	0.10	14.04	0.02	2.504	0.53	0.00	4.7	95.3	0.0	-1.05	0.82	0.66	1.27	4.0	0.004	0.75	0.0	0.04	15.97	0.00	2.318	13.89	1.47	4.3	95.7	0.0	0.50	0.92	0.84	0.70	1.13	9682	1287	6	0	0	0	0	logfile
✔	8XFC	38301	2024-09-27	2023-12-13	3.89	4.30	3.88	4.0	0.005	0.95	9.0	0.06	14.65	0.00	2.081	13.55	2.28	9.0	90.6	0.4	-3.88	0.74	0.85	1.78	4.0	0.003	0.72	0.0	0.04	15.33	0.00	2.380	8.16	2.13	6.5	93.5	0.0	-0.95	0.59	0.74	0.84	0.82	12371	1626	5	0	2	0	0	logfile
✔	8VC1	43129	2024-09-26	2023-12-13	2.85	3.23	2.92	3.2	0.012	1.46	0.0	0.06	17.03	0.01	2.196	4.03	0.30	2.1	97.9	0.0	-1.02	0.59	0.82	3.63	3.3	0.003	0.54	0.0	0.04	16.19	0.00	2.631	7.98	1.11	1.7	98.3	0.0	4.02	0.43	0.57	0.82	1.93	13128	1564	8	0	32	0	0	logfile
✔	8XFB	38300	2024-09-26	2023-12-13	3.4	2.46	3.42	2.2	0.002	0.51	0.0	0.04	14.02	0.01	2.134	4.34	0.23	2.9	97.1	0.0	0.23	0.76	0.76	2.21	2.2	0.004	0.63	0.0	0.04	16.38	0.00	2.517	4.93	1.98	3.8	96.2	0.0	0.18	1.01	0.78	0.81	2.06	11837	1496	3	0	0	0	0	logfile
✔	8RGG	19132	2024-09-24	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.74	0.0	0.04	15.09	0.00	2.433	10.03	3.25	5.9	94.1	0.0	0.65	2.90	0.75	0.59	—	7679	1156	7	0	0	0	0	logfile
✔	8RFE	19118	2024-09-29	2023-12-12	3.8	4.63	3.96	4.1	0.003	0.61	0.0	0.04	16.60	0.00	2.148	11.81	0.14	7.6	91.6	0.8	-0.82	0.84	0.80	0.80	4.1	0.002	0.67	0.0	0.04	14.54	0.00	2.473	9.82	0.54	7.3	92.1	0.7	-0.52	0.39	0.85	0.83	0.85	21776	2765	3	0	12	0	0	logfile
✔	8RF9	19116	2024-09-29	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.68	0.0	0.04	15.53	0.00	2.435	7.93	1.18	9.2	90.0	0.8	-0.70	1.34	0.73	0.83	1.91	20646	2642	1	0	0	0	0	logfile
✘	8REV	19109	2024-09-24	2023-12-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7797	898	7	26	2	0	0	logfile
✔	8RFB	19117	2024-09-23	2023-12-12	4.01	4.26	4.04	4.2	0.015	1.68	0.0	0.10	11.24	0.01	2.144	5.97	2.04	2.7	97.3	0.0	0.42	0.73	0.77	—	4.2	0.004	0.70	0.0	0.05	13.16	0.00	1.806	9.62	0.00	3.4	96.6	0.0	0.08	0.92	0.72	0.79	—	4632	597	1	0	0	0	0	logfile
✘	8VBA	43118	2024-09-25	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile

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